Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N22
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.4  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    26   4.4  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    26   4.4  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   5.8  
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    25   5.8  
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p...    25   7.6  

>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 353 HDFLVPASTTLPLPVWPTAPASGVS 427
           H  +   + +LP PV+P AP S VS
Sbjct: 398 HSNITDEAVSLPEPVYPNAPTSAVS 422


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 44  SLSCTSVSTAPAYTTPRHTNFATPLYEYILVLLTA 148
           S S ++    P+   P   N  TPLYE + VLLTA
Sbjct: 690 SNSMSNHKVNPSILVPPRPN-ETPLYEIVSVLLTA 723


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/62 (24%), Positives = 32/62 (51%)
 Frame = -1

Query: 353 ALTCSSAAASAFDV*IRSQPPESSLELHTEGLPTSHALANTRRHHNMRYSLFYLRKSEYN 174
           A   ++A A+A ++     PPE    L++  +  + +LAN  +  + R+   + R+ +Y+
Sbjct: 273 AAVAAAAVAAAANLTNGVNPPEVPRNLNSSLVDAAESLANVSQQQHHRHP--FARQPDYS 330

Query: 173 HH 168
            H
Sbjct: 331 AH 332


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +1

Query: 319 KALAAAEEQVSARLPCSRI--HHASLASLAYRASFRRLQYLLFDSNNLVSALPNSSKT 486
           + L   E+Q S R   + +  H  SLA+   R  FR ++       NLV AL    KT
Sbjct: 649 RCLRLLEKQRSLRETINSVIPHSDSLAAGNLRLMFRNVKRQTMQEANLVLALAEKQKT 706


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = +2

Query: 122 EYILVLLTAPAPPRN----RGGYIRFSANKINYTAYCGDVVCWQVREMSEAPPCVILRSF 289
           E + +L+T P   ++     G YI F A+K  YT     ++ W V++++   P ++L  F
Sbjct: 299 ENLKILITIPQALKSVTVTEGNYI-FRASK--YTHMEEGILEWSVKKLAWTSPALVLTGF 355

Query: 290 RA 295
            A
Sbjct: 356 LA 357


>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = -3

Query: 417 EAGAVGQTGKGSVV--DAGTRKSCTDLFLSSSKRLRRVDPLATARKLLRITHGGASDISR 244
           ++G+  +T K  VV  D G  K+C  +  SS     R  P      +  IT+G  S +  
Sbjct: 6   KSGSKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIE 65

Query: 243 TCQHTTSPQ 217
                T+ Q
Sbjct: 66  LALWDTAGQ 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,963
Number of Sequences: 5004
Number of extensions: 46355
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)