Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_N22
(560 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g63610.2 68414.m07192 expressed protein 31 0.53
At1g63610.1 68414.m07191 expressed protein 31 0.53
At1g75400.1 68414.m08759 expressed protein 30 0.92
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi... 29 2.1
At5g24100.1 68418.m02830 leucine-rich repeat transmembrane prote... 28 3.7
At4g29110.1 68417.m04167 hypothetical protein 28 3.7
At5g18840.1 68418.m02239 sugar transporter, putative similar to ... 28 4.9
At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) fami... 28 4.9
At3g21865.1 68416.m02756 expressed protein 28 4.9
At1g30580.1 68414.m03741 expressed protein 28 4.9
At1g47660.1 68414.m05295 hypothetical protein 27 6.5
At5g45130.1 68418.m05540 Ras-related protein (RHA1) / small GTP-... 27 8.6
At5g13590.1 68418.m01572 expressed protein 27 8.6
At5g03680.1 68418.m00327 trihelix DNA-binding protein, putative ... 27 8.6
At4g36180.1 68417.m05148 leucine-rich repeat family protein cont... 27 8.6
>At1g63610.2 68414.m07192 expressed protein
Length = 341
Score = 31.1 bits (67), Expect = 0.53
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 24 LKPPPPFPCRALLCQPRPRIQRLDILISLPRYTSTYLCS 140
L+ PP PC + L P++ ++ P T+T+ CS
Sbjct: 11 LQSPPSRPCPSFLANHEPKLSTTSSSVTFPLKTNTWKCS 49
>At1g63610.1 68414.m07191 expressed protein
Length = 340
Score = 31.1 bits (67), Expect = 0.53
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 24 LKPPPPFPCRALLCQPRPRIQRLDILISLPRYTSTYLCS 140
L+ PP PC + L P++ ++ P T+T+ CS
Sbjct: 11 LQSPPSRPCPSFLANHEPKLSTTSSSVTFPLKTNTWKCS 49
>At1g75400.1 68414.m08759 expressed protein
Length = 455
Score = 30.3 bits (65), Expect = 0.92
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +1
Query: 259 SPSVCNSKELSGGCERIYTSKA-LAAAEEQVSARLPCSRIHHA 384
SPSV + +++ G C ++ T ++ +A E ++A L C ++HA
Sbjct: 272 SPSVVD-QQVCGACSKLLTERSSIATFELPIAAVLACGHVYHA 313
>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 551
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 442 DSNNLVSALPNSSKTVTNSARTFQGALSTPQNKCCSSSS 558
DS++ VS+ P+SS +V++S ++ S+P + SSS
Sbjct: 459 DSSSSVSSSPDSSSSVSSSPDSYSSFSSSPDSSSSVSSS 497
>At5g24100.1 68418.m02830 leucine-rich repeat transmembrane protein
kinase, putative
Length = 614
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 424 LQYLLFDSNNLVSALPNSSKTVTNSA 501
L+ L F +NNL ++PNS K NSA
Sbjct: 193 LRRLNFSNNNLTGSIPNSLKRFGNSA 218
>At4g29110.1 68417.m04167 hypothetical protein
Length = 200
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 393 GKGSVVDAGTRKSCTDLF-LSSSKRLRRVDPLATARKLLRITHGG 262
G ++ + R S T +SSS R+R DP A K R HGG
Sbjct: 56 GNKAITNLRRRSSSTGSHDVSSSSRVRDYDPFAFISKRKRRVHGG 100
>At5g18840.1 68418.m02239 sugar transporter, putative similar to
ERD6 protein {Arabidopsis thaliana} GI:3123712,
sugar-porter family protein 1 [Arabidopsis thaliana]
GI:14585699; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 482
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +2
Query: 98 TNFATPLYEYILVLLTAPAPPRN-RGGYIRFSANKI----NYTAYCGDVVCWQVREMSEA 262
T + ++ Y++ + A P+N RGG + I + + G ++ W+ ++
Sbjct: 144 TGYGIGVFSYVVPVYIAEISPKNLRGGLTTLNQLMIVIGSSVSFLIGSLISWKTLALTGL 203
Query: 263 PPCVIL 280
PC++L
Sbjct: 204 APCIVL 209
>At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) family
protein similar to TAR RNA loop binding protein [Homo
sapiens] GI:1184692; contains Pfam profile PF00588: SpoU
rRNA Methylase (RNA methyltransferase, TrmH) family
Length = 1850
Score = 27.9 bits (59), Expect = 4.9
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +1
Query: 295 GCERIYTSKALAAAEEQVSARLPC----SRIHH-ASLASLAYRASFRRLQYL 435
G + IYTS+ + A + VSA C +R+ +LASLA + SF R ++
Sbjct: 549 GLKGIYTSRTIEGAAQYVSAYTSCLNPRNRVGFLINLASLAKKQSFCRAGFM 600
>At3g21865.1 68416.m02756 expressed protein
Length = 283
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 307 IYTSKALAAAEEQVSARLPCSRIHHASLASLAYRAS 414
I+T +A+ EQ R P RIH+A +S A AS
Sbjct: 56 IFTWRAIRTPGEQRQRRQPKRRIHNAETSSAAAAAS 91
>At1g30580.1 68414.m03741 expressed protein
Length = 394
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +2
Query: 185 FSANKINY--TAYCGDVVCWQVREMSEAP 265
FSA + Y TA +V CWQ+R S+AP
Sbjct: 299 FSAINLIYFFTAGPDEVKCWQIRRQSKAP 327
>At1g47660.1 68414.m05295 hypothetical protein
Length = 275
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 368 PASTTLPLPVWPTAP 412
PA T P PVWPT P
Sbjct: 39 PARPTTPPPVWPTTP 53
>At5g45130.1 68418.m05540 Ras-related protein (RHA1) / small
GTP-binding protein identical to Ras-related protein
RHA1 SP:P31582 from [Arabidopsis thaliana]
Length = 200
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 372 AGTRKSCTDLFLSSSKRLRRVDPLATARKLLRITHGGASDISRTC 238
A T + D+F +KRL RV P ++ GA+ +S +C
Sbjct: 154 AKTATNVKDIFYEIAKRLPRVQPAENPTGMVLPNGPGATAVSSSC 198
>At5g13590.1 68418.m01572 expressed protein
Length = 1190
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -2
Query: 115 RGSEISMSRRCIRGRG*HRSARQGKGGGGFRKP 17
R S R RGRG R G+ G FRKP
Sbjct: 1019 RPSNAGRGRGYARGRGYVRGRGYGRDGNSFRKP 1051
>At5g03680.1 68418.m00327 trihelix DNA-binding protein, putative
similar to DNA-binding protein DF1 [Pisum sativum]
GI:13646986
Length = 591
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 415 FRRLQYLLFDSNNLVSALPNSSKTVTNSA 501
FR+L+ L DSNNLVS PN + +SA
Sbjct: 199 FRQLEALYGDSNNLVSC-PNHNTQFMSSA 226
>At4g36180.1 68417.m05148 leucine-rich repeat family protein
contains protein kinase domain, Pfam:PF00069; contains
leucine-rich repeats, Pfam:PF00560
Length = 1136
Score = 27.1 bits (57), Expect = 8.6
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +1
Query: 391 ASLAYRASFRRLQYLLFDSNNLVSALPNSSKTVTNSARTFQG---ALSTPQNKCCSSSS 558
ASLA +S L Y SNNL +P S + N+ F G P N+ C SS+
Sbjct: 686 ASLALISS--NLVYFNVSSNNLKGEIPASLGSRINNTSEFSGNTELCGKPLNRRCESST 742
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,612,879
Number of Sequences: 28952
Number of extensions: 274603
Number of successful extensions: 872
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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