Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N19
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    44   8e-06
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    44   1e-05
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr...    30   0.15 
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   5.5  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 44.4 bits (100), Expect = 8e-06
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
 Frame = +3

Query: 3   NTDLSRLLKSEEIRKVLRAPN-KRVVRA-TRKLNPLTNTKAMLKLNPYAAVLRRKAVL 170
           N D++RL+ S+EI+ +++A    RV RA  +K NPL N   + +LNPYA   +    L
Sbjct: 286 NADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAYKANVKL 343


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 43.6 bits (98), Expect = 1e-05
 Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
 Frame = +3

Query: 3   NTDLSRLLKSEEIRKVLRAPN-KRVVRA-TRKLNPLTNTKAMLKLNPYA 143
           N D++RL+ S+EI+ +++A    RV RA  +K NPL N   + +LNPYA
Sbjct: 286 NADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYA 334


>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 239

 Score = 30.3 bits (65), Expect = 0.15
 Identities = 18/63 (28%), Positives = 37/63 (58%)
 Frame = +3

Query: 9   DLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRN 188
           +LS+  + EEI K      ++V +  RKLN L++ +   K +PY+++    A L+ ++R+
Sbjct: 169 ELSKQPEPEEIIKARLQEEEKVAKRKRKLN-LSDGENKAK-SPYSSISENDASLDIIKRS 226

Query: 189 NLR 197
            ++
Sbjct: 227 RIK 229


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 341 PPSAPQEEDAQGSQT*GESGQTSGQVIYNIYQNK*SF 451
           P S P+E+D++G  +  E+G T      + Y    S+
Sbjct: 608 PKSEPKEQDSEGYSSGSETGSTYSSSYSSTYSRGRSY 644


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,230,401
Number of Sequences: 5004
Number of extensions: 18049
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)