Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N19
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                46   2e-05
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_48611| Best HMM Match : SKI (HMM E-Value=0.00037)                   29   1.4  
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2)                      27   7.4  
SB_10800| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         27   9.7  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 23/49 (46%), Positives = 29/49 (59%)
 Frame = +3

Query: 78  RATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLRALAVAEKRG 224
           RA  K NPL N   ML+LNPYA   +R  +L   RR   +  A+A+KRG
Sbjct: 250 RAIHKKNPLKNLGTMLRLNPYAKSAKRAEMLTVERRRAAKEAALAKKRG 298


>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +2

Query: 89  EIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRE 217
           E  P D  +G    E    GAE  G S T QE QPE A  + +
Sbjct: 577 ESHPPDHTQGADSGEKTSSGAEKTGTS-TSQESQPEKAENQTQ 618


>SB_48611| Best HMM Match : SKI (HMM E-Value=0.00037)
          Length = 926

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 119 DVEAEPVRRGAETEGGSRTGQEEQPEGARRRR 214
           D E EP +  +E   GS +  EE+ E A RRR
Sbjct: 716 DEEGEPCQNVSEEVEGSESSDEEEEEDASRRR 747


>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1126

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +2

Query: 8   RPQPSAEVRRDPQ-GPARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQE 184
           R QP+ + ++ P+ G    +QA   +DT +E  ++          +R    +  S+  +E
Sbjct: 133 RKQPARQSKKKPKRGVKNTKQASKNNDTTVEEEEKQTQPKRTTRSKRKLNDDSSSKETEE 192

Query: 185 EQPEGARRRR 214
           E P+  R  R
Sbjct: 193 ENPKPKRVTR 202


>SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 658

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
 Frame = +2

Query: 2   QHRPQPSAEVRRDPQGP-----ARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAETEGG 166
           + R Q ++E + DP+G      AR  Q+   S  E+EPA+ YE  ++++  R  A  +  
Sbjct: 115 RRRAQANSEQKTDPKGVRYKIMARRDQSS--SYYEVEPAEPYEMPIDSDKPRGPALNKQA 172

Query: 167 SRTGQEEQPE 196
           ++T  +++ +
Sbjct: 173 AQTQIQDKAD 182


>SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2)
          Length = 2527

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 27   KSEEIRKVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRR 158
            +SE+   +  + NKR   A  K   L   KAM  + P+ AV ++
Sbjct: 2405 RSEKASNLKTSRNKRATSADSKAYYLVRGKAMFDVGPFEAVAQQ 2448


>SB_10800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 943

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 227 DATFLCDGERPQV-VPPDLFENRL 159
           DATF  DGE+  V +P D+F  +L
Sbjct: 380 DATFFFDGEKDHVDIPDDVFPQKL 403


>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 104 DQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRETWH 226
           D+  G V  +  R+G+++EGGS   + E  +   R+++  H
Sbjct: 85  DKKAGKVRDDRARKGSDSEGGSDERKCEDRKDKTRKKKRKH 125


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 191  VVPPDLFENRLPSQHRGVRVQLQHRLRIGQR 99
            + P       LPS HRG R+ ++   R G R
Sbjct: 1572 MTPDSRLHRLLPSSHRGTRLLMERAHRAGHR 1602


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,444,869
Number of Sequences: 59808
Number of extensions: 141744
Number of successful extensions: 647
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)