Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_N19
(457 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 54 5e-08
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 27 4.9
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 27 4.9
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 27 4.9
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 27 4.9
Z68338-4|CAE48509.1| 104|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z47812-8|CAD59156.1| 414|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z47812-7|CAA87793.1| 397|Caenorhabditis elegans Hypothetical pr... 27 8.6
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 54.0 bits (124), Expect = 5e-08
Identities = 24/52 (46%), Positives = 34/52 (65%)
Frame = +3
Query: 3 NTDLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRR 158
N+D SR+++SEE+ K +RAP K V NPL + KLNPYA++LR+
Sbjct: 286 NSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTLLYKLNPYASILRK 337
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 27.5 bits (58), Expect = 4.9
Identities = 20/69 (28%), Positives = 27/69 (39%)
Frame = +2
Query: 11 PQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQ 190
P+P AE P + ++ E EPA + E E EP TE T +E +
Sbjct: 497 PEPVAEEPEPVAEPEPEPEPVAEAEPEAEPAVEEEPAEEPEPAADETATE---PTAEEAE 553
Query: 191 PEGARRRRE 217
PE E
Sbjct: 554 PEAVEESIE 562
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 27.5 bits (58), Expect = 4.9
Identities = 20/69 (28%), Positives = 27/69 (39%)
Frame = +2
Query: 11 PQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQ 190
P+P AE P + ++ E EPA + E E EP TE T +E +
Sbjct: 447 PEPVAEEPEPVAEPEPEPEPVAEAEPEAEPAVEEEPAEEPEPAADETATE---PTAEEAE 503
Query: 191 PEGARRRRE 217
PE E
Sbjct: 504 PEAVEESIE 512
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 27.5 bits (58), Expect = 4.9
Identities = 20/69 (28%), Positives = 27/69 (39%)
Frame = +2
Query: 11 PQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQ 190
P+P AE P + ++ E EPA + E E EP TE T +E +
Sbjct: 497 PEPVAEEPEPVAEPEPEPEPVAEAEPEAEPAVEEEPAEEPEPAADETATE---PTAEEAE 553
Query: 191 PEGARRRRE 217
PE E
Sbjct: 554 PEAVEESIE 562
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 27.5 bits (58), Expect = 4.9
Identities = 20/69 (28%), Positives = 27/69 (39%)
Frame = +2
Query: 11 PQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQ 190
P+P AE P + ++ E EPA + E E EP TE T +E +
Sbjct: 497 PEPVAEEPEPVAEPEPEPEPVAEAEPEAEPAVEEEPAEEPEPAADETATE---PTAEEAE 553
Query: 191 PEGARRRRE 217
PE E
Sbjct: 554 PEAVEESIE 562
>Z68338-4|CAE48509.1| 104|Caenorhabditis elegans Hypothetical
protein T24B8.3b protein.
Length = 104
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +2
Query: 14 QPSAEVRRDPQGPARAQ-QACC*SDTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQ 190
+P+ +V +D +G + + E+ D EG+ E G E G G+E +
Sbjct: 39 EPAEKVTKDAEGEEEGDDEDADDEEDEVNDEDSSEGEGEGSDAGEGEEGSGDDEDGEEAE 98
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
F47A4.2 protein.
Length = 3498
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/65 (23%), Positives = 33/65 (50%)
Frame = +2
Query: 2 QHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQ 181
Q+R +A++++ P A+ QQ ++ + Y ++ + VR+G + GG
Sbjct: 3389 QYRRMQAAQMQQQPT--AQGQQNRMGMPSQQQSGAAYSNQMQFQGVRQGQQGMGGMGGSG 3446
Query: 182 EEQPE 196
++QP+
Sbjct: 3447 QQQPQ 3451
>Z47812-8|CAD59156.1| 414|Caenorhabditis elegans Hypothetical
protein T05H10.6b protein.
Length = 414
Score = 26.6 bits (56), Expect = 8.6
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +3
Query: 75 VRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLRALAVAEKRGIKLPE 239
VR TR +P+T K + + A KA+ ++VR+ AL +A G+ PE
Sbjct: 321 VRKTR--DPITGFKDRIITSSLATEEELKAIDKEVRKEVDEALKIATSDGVLPPE 373
>Z47812-7|CAA87793.1| 397|Caenorhabditis elegans Hypothetical
protein T05H10.6a protein.
Length = 397
Score = 26.6 bits (56), Expect = 8.6
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +3
Query: 75 VRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLRALAVAEKRGIKLPE 239
VR TR +P+T K + + A KA+ ++VR+ AL +A G+ PE
Sbjct: 304 VRKTR--DPITGFKDRIITSSLATEEELKAIDKEVRKEVDEALKIATSDGVLPPE 356
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,941,967
Number of Sequences: 27780
Number of extensions: 108806
Number of successful extensions: 399
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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