Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_N19
(457 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 62 2e-10
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 56 1e-08
At1g53510.1 68414.m06068 mitogen-activated protein kinase, putat... 29 1.5
At1g16160.1 68414.m01936 protein kinase family protein contains ... 29 1.5
At5g60080.1 68418.m07533 protein kinase family protein contains ... 28 2.6
At5g53800.1 68418.m06685 expressed protein 28 2.6
At3g17830.1 68416.m02273 DNAJ heat shock family protein similar ... 28 2.6
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P... 28 3.4
At5g44610.1 68418.m05466 DREPP plasma membrane polypeptide-relat... 27 4.5
At5g61150.1 68418.m07671 leo1-like family protein weak similarit... 27 7.9
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 27 7.9
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 27 7.9
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 61.7 bits (143), Expect = 2e-10
Identities = 30/73 (41%), Positives = 44/73 (60%)
Frame = +3
Query: 3 NTDLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVR 182
N DL+R++ S+EI+ V+ K RA K NPL N MLKLNPYA +R ++L + +
Sbjct: 292 NADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQ 351
Query: 183 RNNLRALAVAEKR 221
R + +A+KR
Sbjct: 352 RVKAKKEKLAKKR 364
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 55.6 bits (128), Expect = 1e-08
Identities = 28/84 (33%), Positives = 44/84 (52%)
Frame = +3
Query: 3 NTDLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVR 182
N DL+R++ S+E++ V+ RA K NPL N M KLNPYA +R ++L +
Sbjct: 293 NADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEAS 352
Query: 183 RNNLRALAVAEKRGIKLPETHPAV 254
R + + +KR + E A+
Sbjct: 353 RVKAKKEKLEKKRKVVTKEEAQAI 376
>At1g53510.1 68414.m06068 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK18) mitogen-activated protein
kinase (MAPK)(AtMPK18), PMID:12119167
Length = 603
Score = 29.1 bits (62), Expect = 1.5
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +3
Query: 6 TDLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYA-AVLRRKAVLE-QV 179
TDL KSE I V ++ + RK NP+T ++ K +P A +L+R + +
Sbjct: 232 TDLLGTPKSETISGVRNDKARKYLTEMRKKNPVTFSQKFSKADPLALRLLQRLLAFDPKD 291
Query: 180 RRNNLRALAVAEKRGIKLPETHPA 251
R ALA +G+ E P+
Sbjct: 292 RPTPAEALADPYFKGLSKIEREPS 315
>At1g16160.1 68414.m01936 protein kinase family protein contains
similarity to wall-associated kinase 4 GI:3355308 from
[Arabidopsis thaliana]
Length = 711
Score = 29.1 bits (62), Expect = 1.5
Identities = 22/57 (38%), Positives = 27/57 (47%)
Frame = +3
Query: 3 NTDLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLE 173
N D+SRL SEE++K N V R K + T K M+ AV R K V E
Sbjct: 393 NVDMSRLFSSEELKKA--TDNFSVKRVLGKGSQGTVYKGMMVDGKIIAVKRSKVVDE 447
>At5g60080.1 68418.m07533 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 377
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 20 SAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDVEAE 133
S++V +DP + QQ SD+ P Q EGD EA+
Sbjct: 14 SSKVMQDPSELPQQQQPSDSSDSSDTPGQQSEGDDEAD 51
>At5g53800.1 68418.m06685 expressed protein
Length = 351
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 80 SDTEIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRE 217
SD+E E +Y E+E + + +EE+ E RRRRE
Sbjct: 108 SDSESESESEYSDSEESESEDERRRRKRKRKEREEEEKERKRRRRE 153
>At3g17830.1 68416.m02273 DNAJ heat shock family protein similar to
SP|P35514 Chaperone protein dnaJ {Lactococcus lactis};
contains Pfam profiles PF00226: DnaJ domain, PF01556:
DnaJ C terminal region, PF00684: DnaJ central domain (4
repeats)
Length = 517
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 125 EAEPVRRGAETEGGSRTGQEEQPEGARRRRE--TWH 226
E +RR + + G + T QEEQ G+ R+E WH
Sbjct: 416 EFSSLRRSSSSTGPTETRQEEQSFGSEPRKEPSLWH 451
>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
domain, PF00538: linker histone H1 and H5 family;similar
to HMG I/Y like protein (GI:15706274) [Glycine
max];similar to HMR1 protein (GI:4218141) [Antirrhinum
majus]; similar to high mobility group protein
(GI:1483173) [Canavalia gladiata]
Length = 480
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 89 EIEPADQYEGDVEAEPVRRGAETEGGSRTGQEEQPE 196
E++P + EA+ AET+GG GQE + E
Sbjct: 431 EVQPEETAAPQTEAQQTE-AAETQGGQEEGQEREGE 465
>At5g44610.1 68418.m05466 DREPP plasma membrane polypeptide-related
contains Pfam profile: PF05558 DREPP plasma membrane
polypeptide
Length = 168
Score = 27.5 bits (58), Expect = 4.5
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 27 KSEEIRKVLRAPNKR-VVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRNNLRAL 203
K E+ + A K+ V +K P+ K ++ AV +K V E+ ++ + A+
Sbjct: 77 KPVEVPVLAAAEEKKPAVEEEKKTAPVEEKKPAVEEEKKPAVEEKKPV-EEEKKEVVAAV 135
Query: 204 AVAEKRGIKLPET 242
VAE K PET
Sbjct: 136 PVAETPSTKAPET 148
>At5g61150.1 68418.m07671 leo1-like family protein weak similarity
to SP|P38439 LEO1 protein {Saccharomyces cerevisiae};
contains Pfam profile PF04004: Leo1-like protein;
supporting cDNA gi|21929714|gb|AF490422.1|
Length = 625
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 104 DQYEGDVEAEPVRRGAETEGGSRTGQEEQPEGARRRRE 217
D+YE D E + RG +EE+ G R ++
Sbjct: 550 DEYEEDAEEDEEERGKSNRYSDEDEEEEEVAGGRAEKD 587
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 26.6 bits (56), Expect = 7.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 72 HACWARAGPCGSLRTSADG*GRCW 1
+AC P G S DG G+CW
Sbjct: 504 YACQVNFSPDGRFVMSGDGEGKCW 527
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 26.6 bits (56), Expect = 7.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 89 EIEPADQYEGDVEAEPVRRGAETEGGSRTGQEE 187
E++ AD E +VEAE G + G G+E+
Sbjct: 183 ELDDADDGENEVEAEDEGNGEDEGDGEDEGEED 215
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,604,087
Number of Sequences: 28952
Number of extensions: 100399
Number of successful extensions: 353
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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