Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N17
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    26   0.20 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.61 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   7.5  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   7.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   10.0 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   10.0 

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 191 IAKEESFGPIMIISKFSSRNMEDVIRRANNTEYGL 295
           + KEE+     +IS FS +++E +IRR  N+ Y L
Sbjct: 93  LCKEEALWNFPMISVFSRQDIETIIRR--NSRYPL 125


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 215 PIMIISKFSSRNMEDVIRRANNTEYGLASGV-FTRDVSRALQF 340
           P+MII++F      D   RAN+ ++ +   V   R ++  +Q+
Sbjct: 708 PVMIITEFMENGSLDTFLRANDGKFQVLQLVGMLRGIASGMQY 750


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 462 FRASWPRSFPKPDCLKP 412
           F  SW    P+P  LKP
Sbjct: 27  FLPSWDGKMPQPCILKP 43


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = +2

Query: 356 AGTVFVNTYNKTDVAAPFGGFKQSGFGKDLGQEALNEYLKTKTVT 490
           +G +  N Y +         F +  + +D     LN Y++ K VT
Sbjct: 24  SGAIKGNDYQRYHQQISGDRFSKDFYRQDTKNNLLNAYVRFKLVT 68


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 253 HVPAAKFADNHDRSERFLLSDV 188
           H+P A   D+ +   R+L  DV
Sbjct: 426 HIPHASVTDSENTVPRYLSPDV 447


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +3

Query: 303 ACSRGTCRARCSSRN 347
           AC +G C    SS N
Sbjct: 121 ACKQGVCTVEVSSEN 135


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +3

Query: 303 ACSRGTCRARCSSRN 347
           AC +G C    SS N
Sbjct: 121 ACKQGVCTVEVSSEN 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,246
Number of Sequences: 438
Number of extensions: 2009
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)