Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N16
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    25   3.3  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   4.4  
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    25   4.4  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    24   5.8  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    24   7.6  

>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 150 IIDGDNQVNIVDGPSGPTPRDGSLL 224
           I DG N V ++     PTP  G  L
Sbjct: 5   IADGQNGVEVISDAPKPTPEKGEFL 29


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -3

Query: 146 YLIISIDNLNFIRVTTGLVLRSSRCERKQCDQCQYNRKLSH 24
           +L+ S+   NF+ V+   +      E+  CD  Q    L H
Sbjct: 193 FLVGSMSRFNFVMVSDRFIEEIEHLEKSGCDSRQKETVLVH 233


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 135 DNQVNIIDGDNQVNIVDGPSGPTPRDGSL 221
           D    ++DGD++V+++     P P DG L
Sbjct: 117 DESNEVLDGDDEVSLLVKSLCPHPTDGLL 145


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 87  QDESGGNPNEVQVVDGDNQVNIIDGDNQVNIVDGPSGPTP 206
           +D    NPN V  + G N + + + D++ ++  G S P P
Sbjct: 359 RDSFTQNPNAVAFMSGLNNMELANTDHEWSV--GSSSPEP 396


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 170 LVVSVNDVYLIISIDNLNFIRVTTGLVLRSS 78
           L+  V D+Y I+ + ++  + VTT L +  S
Sbjct: 705 LLTVVMDIYFIVPLHDIRSLAVTTALKMLCS 735


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,096,683
Number of Sequences: 5004
Number of extensions: 17896
Number of successful extensions: 46
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)