Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_N16
(346 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 29 0.98
01_03_0234 - 14051013-14051042,14051723-14051912,14052127-14052383 29 0.98
10_06_0116 + 10945231-10945501,10946018-10946241,10946329-109467... 27 3.0
03_05_0060 + 20363857-20365359 27 3.0
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 27 3.9
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 27 3.9
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 27 5.2
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 26 6.9
11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440... 26 9.1
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 26 9.1
03_01_0107 + 849489-850652,850745-850835,850926-851083,851180-85... 26 9.1
01_07_0311 + 42667114-42667132,42667336-42667367,42667449-426678... 26 9.1
01_06_0250 + 27876358-27879261 26 9.1
>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 29.1 bits (62), Expect = 0.98
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 102 GNPNEVQVVDGDNQVNIIDGDNQV 173
GNP+EV V D+Q+ + DG V
Sbjct: 1410 GNPSEVLVTSADSQIRVFDGVTMV 1433
>01_03_0234 - 14051013-14051042,14051723-14051912,14052127-14052383
Length = 158
Score = 29.1 bits (62), Expect = 0.98
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +3
Query: 87 QDESGGNPNEVQVVDGDNQVNIIDGDNQVN---IVDGPSGP 200
Q SG NPN++ VV+G Q + G ++ I+DGP GP
Sbjct: 13 QTISGPNPNQLVVVNGSQQAPLFFGLTAISDWTILDGP-GP 52
>10_06_0116 +
10945231-10945501,10946018-10946241,10946329-10946725,
10946804-10946893,10947118-10947239,10947390-10947428
Length = 380
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 99 GGNPNEVQVVDGDNQVNIIDGDNQVNIVDGPSG 197
G NP+ V+ +D V++ DG N DG SG
Sbjct: 114 GKNPDSVKEIDPTAIVDMFDGKCLANCSDGTSG 146
>03_05_0060 + 20363857-20365359
Length = 500
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 129 DGDNQVNIIDGDNQVNIVDGPSGPTPRDGSLL 224
DG ++ +++GD GP+GP +G L
Sbjct: 106 DGPGEIQVLEGDGFGGGTGGPAGPVQCEGETL 137
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 27.1 bits (57), Expect = 3.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 105 NPNEVQVVDGDNQVNIIDGDNQVNIVDG 188
NP+++ V D+++ I+DG N + G
Sbjct: 457 NPSKLMVTSADSKIRILDGTNVIQNYSG 484
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 27.1 bits (57), Expect = 3.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 219 EIRHVELDHLDRRLCSPGCLR 157
E HV+LD+++ C PGC++
Sbjct: 175 EESHVKLDYVEVVCCEPGCMK 195
>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 26.6 bits (56), Expect = 5.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 241 VIPFYLRRDPSRGVGPLGPSTM 176
++PFY+ + PS G GP T+
Sbjct: 1122 ILPFYINKVPSTGGNRFGPPTL 1143
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 26.2 bits (55), Expect = 6.9
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Frame = +3
Query: 105 NPNEVQVVDGDNQVNIIDGD-----NQVNIVDGPSGPTPRDGSLLK*N 233
N +E Q DG N V DG+ + + DG TP DGS + N
Sbjct: 1711 NGSEKQDTDGKNHVESKDGEGEPEQTEASKGDGDGAITPEDGSAVTEN 1758
>11_01_0559 -
4406815-4406922,4408954-4409042,4409177-4409270,
4409344-4409481,4409570-4409727,4409826-4409916,
4410003-4411637
Length = 770
Score = 25.8 bits (54), Expect = 9.1
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 102 GNPNEVQVVDGDNQVNIIDG 161
GNP+E+ V D+Q+ + +G
Sbjct: 678 GNPSEILVTTADSQIRVFNG 697
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 25.8 bits (54), Expect = 9.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 219 EIRHVELDHLDRRLCSPGCLR 157
E HV+LD+ + C PGC++
Sbjct: 374 EESHVKLDYSEVICCEPGCMK 394
>03_01_0107 +
849489-850652,850745-850835,850926-851083,851180-851231,
852373-852452,852540-852633,852711-853231,854087-854202,
854242-854293
Length = 775
Score = 25.8 bits (54), Expect = 9.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 105 NPNEVQVVDGDNQVNIIDG 161
+P ++ V GD+QV I+DG
Sbjct: 520 DPKKLMVTSGDSQVRILDG 538
>01_07_0311 +
42667114-42667132,42667336-42667367,42667449-42667822,
42667895-42668028,42668147-42668303,42668994-42669098,
42669342-42669645,42670404-42670478,42671467-42672589,
42673686-42673727,42674017-42674111,42674199-42674239,
42674375-42674414
Length = 846
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 333 FLLKNIYLYKKNALNLMY*LINYKIK 256
F L+ Y YKKN ++ L N+++K
Sbjct: 161 FTLEKTYYYKKNGNEIIVKLANFEVK 186
>01_06_0250 + 27876358-27879261
Length = 967
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 87 QDESGGNPNEVQVVDGDNQVNIIDGD 164
Q+ESGGN + + G V+ IDGD
Sbjct: 400 QEESGGNKHAGASLSGVMSVSSIDGD 425
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,009,483
Number of Sequences: 37544
Number of extensions: 121751
Number of successful extensions: 301
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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