Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N16
         (346 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical pr...    27   3.6  
AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical ...    27   4.8  
Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical pr...    26   6.3  

>U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical
           protein C10H11.8 protein.
          Length = 382

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 96  SGGNPNEVQVVDGDNQVNIIDGDNQVNIVDG--PSGPTP 206
           +GGN N+V++ D +N   +   D  +  +     +GPTP
Sbjct: 342 TGGNDNQVKIWDVENNKKVAQWDGHIKPLTAMCMNGPTP 380


>AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical
           protein F55A12.6 protein.
          Length = 423

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 93  ESGGNPNEVQ-VVDGDNQVNIIDGDNQVNIVDG 188
           E+ G   EV+ V DG   V  +DG+ +  +VDG
Sbjct: 294 EAAGEAGEVEDVEDGVKDVEEVDGEVEEEVVDG 326


>Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical
           protein F07B10.4 protein.
          Length = 724

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 182 DYVHLVVSVNDVYLIISIDNLNF 114
           +YV  + SV  + LI+++DN+ +
Sbjct: 152 NYVFFIASVGSILLILNVDNIEY 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,188,528
Number of Sequences: 27780
Number of extensions: 109651
Number of successful extensions: 345
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)