Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N16
         (346 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pf...    28   1.9  
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ...    27   3.4  
At1g34060.1 68414.m04222 alliinase family protein contains Pfam ...    27   4.4  
At5g07500.1 68418.m00858 zinc finger (CCCH-type) family protein ...    26   5.9  
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ...    26   7.7  

>At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pfam
           profile PF00400: WD domain, G-beta repeat
          Length = 580

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
 Frame = +1

Query: 7   RDECSSWLSLRLY------WHWSHCLRSQRLDLKTSPVV 105
           R  C +WL L  Y      W W +  RS R +++  PV+
Sbjct: 98  RQGCPTWLLLEQYLLKHHNWKWEYTGRSSRYNMEARPVL 136


>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); similiar to rab11 binding
           protein (GI:4512103) [Bos taurus]
          Length = 903

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 105 NPNEVQVVDGDNQVNIIDGDNQVNIVDG 188
           NP+EV V   D+++ I+DG   ++   G
Sbjct: 651 NPSEVLVTSADSRIRILDGSEVIHKFKG 678


>At1g34060.1 68414.m04222 alliinase family protein contains Pfam
           profiles: PF04864 allinase C-terminal domain, PF04863
           alliinase EGF-like domain
          Length = 463

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 93  ESGGNPNEVQVVDGDNQVNIIDGDNQVNIVDGPSGPTPRD 212
           +SG N N  QV++     N  DG  +  ++DGP+  T  D
Sbjct: 220 QSGRNDNITQVIEVVTSPNNPDGKLKRAVLDGPNVKTLHD 259


>At5g07500.1 68418.m00858 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 245

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -2

Query: 183 RLCSPG--CLRQ*CLLDYLHRQLELH*GYHRTRLEV*PLRAQ 64
           R C+ G  C R+ C   +   QL    G HR R    P+RA+
Sbjct: 131 RACNAGNLCQRKVCFFAHAPEQLRQSEGKHRCRYAYRPVRAR 172


>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); rab11 binding protein, Bos
           taurus, EMBL:AF117897
          Length = 905

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 105 NPNEVQVVDGDNQVNIIDGDNQV 173
           NP+EV V   D+++ ++DG   V
Sbjct: 663 NPSEVLVTSADSRIRVLDGTELV 685


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,708,700
Number of Sequences: 28952
Number of extensions: 96933
Number of successful extensions: 243
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)