Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_N14
(276 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 24 4.6
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 24 4.6
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 23 6.1
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 23 6.1
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 23 6.1
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 23 6.1
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 23 6.1
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 23 8.0
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 23 8.0
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 23 8.0
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 23 8.0
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 23 8.0
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3... 23 8.0
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar... 23 8.0
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 23 8.0
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 23 8.0
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 23 8.0
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 23.8 bits (49), Expect = 4.6
Identities = 9/48 (18%), Positives = 24/48 (50%)
Frame = +2
Query: 107 EKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDA 250
+ F +D + +W EH K ++ + + +++ + D+ + SE +
Sbjct: 49 QAFQEDEGDEDWEEEEHKPKAKRRYNTRSNESFSEGD-DEPFEVSESS 95
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 23.8 bits (49), Expect = 4.6
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -2
Query: 143 PNLIPMNRLRIFPQRTLHNLLTKLPIN 63
P+ P+ R+R F + LH+ + ++ I+
Sbjct: 79 PHFFPIKRIRPFHENPLHSFVYRIMIS 105
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 23.4 bits (48), Expect = 6.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 84 IDEIANKLAIASTADFI 34
I EIA K A+ASTAD +
Sbjct: 398 ISEIAVKTAMASTADIL 414
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 23.4 bits (48), Expect = 6.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 95 VFFEEKFSDDSWESNWVYSEHPG 163
VF E F ++ WE VY E G
Sbjct: 233 VFGENLFDENDWEYKSVYDEDLG 255
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 23.4 bits (48), Expect = 6.1
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -1
Query: 183 LNLPNSFPGCSLYTQFDSHESSENFSSKNTSQFIDEI 73
L L S PG Q D S E SS S +DE+
Sbjct: 1526 LELKESLPGVLQNGQTDLDPSKEQMSSVIVSFLLDEL 1562
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 23.4 bits (48), Expect = 6.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 144 TQFDSHESSENFSSKNTSQFIDEIANK 64
T D+H E+F S+ + FI E K
Sbjct: 220 TAGDTHLGGEDFDSRLVNHFIQEFKRK 246
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 23.4 bits (48), Expect = 6.1
Identities = 7/25 (28%), Positives = 11/25 (44%)
Frame = +2
Query: 104 EEKFSDDSWESNWVYSEHPGKEFGK 178
E D +WE W+ P + G+
Sbjct: 1732 ERAIIDKAWEEGWIVPRPPAERTGR 1756
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 23.0 bits (47), Expect = 8.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 186 NLNLPNSFPGCSLYTQFDSHESSENFSSKN 97
NLNLPNS+ S + + S + SS +
Sbjct: 51 NLNLPNSYTNSSQKVRESTVNSQASLSSND 80
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 23.0 bits (47), Expect = 8.0
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -2
Query: 161 RGVHYI--PNLIPMNRLRIFPQRTLHNLLT 78
R H+I PNL L+ P+ T HN LT
Sbjct: 348 RNGHHISDPNLNSSISLKFAPEDTAHNSLT 377
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 107 EKFSDDSWESNWVYSE 154
+K SD WE N Y+E
Sbjct: 347 KKLSDGHWEQNTTYNE 362
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 23.0 bits (47), Expect = 8.0
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +1
Query: 55 YCQFIGNFVNKL 90
YC+ IGN++N++
Sbjct: 1491 YCELIGNYLNRV 1502
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 23.0 bits (47), Expect = 8.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 228 VYRHLKTRGSTPYRG 272
++R LKTRG+TP G
Sbjct: 338 LFRALKTRGNTPKYG 352
>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 334
Score = 23.0 bits (47), Expect = 8.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 201 NFPAVNLNLPNSFPGCSLYTQFDSHESSENFSSKNTSQ 88
N P ++ +LP+S +L T S + +S NT+Q
Sbjct: 231 NGPPIDKSLPSSEMDSNLQTNPSSISKGKKNNSNNTTQ 268
>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 256
Score = 23.0 bits (47), Expect = 8.0
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -1
Query: 186 NLNLPNSFPGCSLYTQFDSHESSENFSSKNT 94
NLNL FP ++Y D + S K T
Sbjct: 72 NLNLKKEFPHVTIYGGSDQNGVSHVLQDKET 102
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 23.0 bits (47), Expect = 8.0
Identities = 6/17 (35%), Positives = 11/17 (64%)
Frame = +2
Query: 122 DSWESNWVYSEHPGKEF 172
D+W+ +++ H KEF
Sbjct: 257 DTWDETFIFDVHRAKEF 273
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 23.0 bits (47), Expect = 8.0
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = -1
Query: 186 NLNLPNSFPGCSLYTQFDSHESSENFSSKNTSQFIDEIANKLAIASTAD 40
NLN PN L + + +E+S ++++ DE ++++ S++D
Sbjct: 135 NLNKPNDL----LKAEIEDNEASHYSQNQSSDSDSDEAPEEVSLKSSSD 179
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 23.0 bits (47), Expect = 8.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 191 AGKFYNDAEADKGLQTSEDARFYAL 265
A F + +E+ KGL +SE Y+L
Sbjct: 263 ADSFLSHSESIKGLSSSEQGTVYSL 287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,160,168
Number of Sequences: 5004
Number of extensions: 21132
Number of successful extensions: 80
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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