Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N14
         (276 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...    77   2e-15
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...    77   2e-15
Z68302-4|CAB54515.1|  521|Caenorhabditis elegans Hypothetical pr...    29   0.62 
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    29   0.62 
AF022976-2|AAC69081.1|  146|Caenorhabditis elegans Hypothetical ...    27   1.9  
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr...    26   3.3  
AF273806-1|AAG15155.1|  395|Caenorhabditis elegans nuclear recep...    26   3.3  
AF022976-15|AAO26008.1|  324|Caenorhabditis elegans Nuclear horm...    26   3.3  
AF022976-14|AAC69077.1|  393|Caenorhabditis elegans Nuclear horm...    26   3.3  
Z50863-2|CAA90737.1|  351|Caenorhabditis elegans Hypothetical pr...    25   5.8  
Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical pr...    25   5.8  
AF047656-12|AAC05111.1|  168|Caenorhabditis elegans Hypothetical...    25   5.8  
Z74042-16|CAA98527.3|  512|Caenorhabditis elegans Hypothetical p...    25   7.7  
Z74042-15|CAD54157.1|  505|Caenorhabditis elegans Hypothetical p...    25   7.7  
U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain (pr...    25   7.7  
U21320-6|AAA62538.4|  234|Caenorhabditis elegans Hypothetical pr...    25   7.7  
AL117204-27|CAB55133.2|  241|Caenorhabditis elegans Hypothetical...    25   7.7  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score = 76.6 bits (180), Expect = 2e-15
 Identities = 32/63 (50%), Positives = 48/63 (76%)
 Frame = +2

Query: 86  NCEVFFEEKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYAL 265
           + EV+F+E+F+D SWE  WV S+H   +FG FKL+AGKF++    D+G+QTS+DA+FY+ 
Sbjct: 14  SAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYSR 72

Query: 266 SRK 274
           + K
Sbjct: 73  AAK 75


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score = 76.6 bits (180), Expect = 2e-15
 Identities = 32/63 (50%), Positives = 48/63 (76%)
 Frame = +2

Query: 86  NCEVFFEEKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYAL 265
           + EV+F+E+F+D SWE  WV S+H   +FG FKL+AGKF++    D+G+QTS+DA+FY+ 
Sbjct: 14  SAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYSR 72

Query: 266 SRK 274
           + K
Sbjct: 73  AAK 75


>Z68302-4|CAB54515.1|  521|Caenorhabditis elegans Hypothetical
           protein ZK792.8 protein.
          Length = 521

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 162 PGCSLYTQFDSHESSEN-FSSKNTSQFID 79
           P C+L  QF+S E  +N     N SQFID
Sbjct: 443 PSCALCFQFESREQFDNDMRQLNLSQFID 471


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
           protein F55F10.1 protein.
          Length = 4368

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 147 YTQFDSHESSENFSSKNTSQFIDEIANKLAIASTADFI 34
           +T+F     ++NF SKN  +FID +   L+     D++
Sbjct: 437 FTKFYMEVFTKNFDSKNNQKFIDNLEKCLSSGRFKDYL 474


>AF022976-2|AAC69081.1|  146|Caenorhabditis elegans Hypothetical
           protein R11G11.6 protein.
          Length = 146

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 147 YTQFDS-HESSENFSSKNTSQFIDEIAN 67
           YT +    + +ENF SKNT+Q I ++++
Sbjct: 67  YTAYTKKQQDNENFMSKNTTQIISQLSS 94


>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical protein
            F01G4.3 protein.
          Length = 1266

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -1

Query: 186  NLNLPNSFPGCSLYTQFDSHES 121
            NLNLP SFP     T+FD H S
Sbjct: 1025 NLNLPQSFPARHC-TRFDEHFS 1045


>AF273806-1|AAG15155.1|  395|Caenorhabditis elegans nuclear receptor
           NHR-58 protein.
          Length = 395

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 143 PNLIP-MNRLRIFPQRTLHNLLTKLPIN 63
           P+  P MN+  +F     HN+ TK+P+N
Sbjct: 138 PSWTPHMNKGPLFKLANFHNVFTKMPVN 165


>AF022976-15|AAO26008.1|  324|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 58, isoform b protein.
          Length = 324

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 143 PNLIP-MNRLRIFPQRTLHNLLTKLPIN 63
           P+  P MN+  +F     HN+ TK+P+N
Sbjct: 67  PSWTPHMNKGPLFKLANFHNVFTKMPVN 94


>AF022976-14|AAC69077.1|  393|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 58, isoform a protein.
          Length = 393

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 143 PNLIP-MNRLRIFPQRTLHNLLTKLPIN 63
           P+  P MN+  +F     HN+ TK+P+N
Sbjct: 136 PSWTPHMNKGPLFKLANFHNVFTKMPVN 163


>Z50863-2|CAA90737.1|  351|Caenorhabditis elegans Hypothetical
           protein C14H10.4 protein.
          Length = 351

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 98  FFEEKFSDDSWESNWVYS 151
           FF   FS  SW++ W+YS
Sbjct: 273 FFHFFFSKFSWQTGWLYS 290


>Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical protein
            F33H1.4 protein.
          Length = 1385

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 192  AVNLNLPNSFPGCSLYTQFDSHESSENFSSKNTSQ 88
            A++ +L  + PG   +   DSHE +E   + N+ Q
Sbjct: 995  AIDRHLKRAKPGVDQHDPDDSHEDAEAICTTNSQQ 1029


>AF047656-12|AAC05111.1|  168|Caenorhabditis elegans Hypothetical
           protein F17E9.2 protein.
          Length = 168

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 128 WESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYALSRK 274
           WE + +  +H G  F  F   AG FY     D G   +E+  FY +  K
Sbjct: 51  WEEDGLIDDHLGDTFLFFLSEAGAFYKIDVQDDGDGPNEN--FYRIYYK 97


>Z74042-16|CAA98527.3|  512|Caenorhabditis elegans Hypothetical
           protein T11F9.2b protein.
          Length = 512

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 141 QFDSHESSENFSSKNTSQFIDEIANK 64
           +F S + S + ++ NTSQF+D I N+
Sbjct: 260 EFRSPKLSSHHTNGNTSQFLDVINNE 285


>Z74042-15|CAD54157.1|  505|Caenorhabditis elegans Hypothetical
           protein T11F9.2a protein.
          Length = 505

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 141 QFDSHESSENFSSKNTSQFIDEIANK 64
           +F S + S + ++ NTSQF+D I N+
Sbjct: 253 EFRSPKLSSHHTNGNTSQFLDVINNE 278


>U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 9 protein.
          Length = 591

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -1

Query: 252 LASSDVCKPLSASASL*NFPAVNLNLPNSFPGCSLYTQFDSHESSENF 109
           L +  V   +S    L  +  ++ +   SFP C LYT+F        F
Sbjct: 360 LTTYGVNPAISMDRRLSRYSRISCSFHFSFPSCLLYTKFKLKAGQSTF 407


>U21320-6|AAA62538.4|  234|Caenorhabditis elegans Hypothetical
           protein K04G7.11 protein.
          Length = 234

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 260 RRTSRLQMSVNLYPPLRHCRTFQQSI*TCRILFRGVHYIPNLIPMNRL 117
           R T+ L   ++ Y  +R C   +Q   T   L  G HY P    M++L
Sbjct: 127 RLTAALDPDLDSYKKMRECVGGEQFYPTADTLIHGNHY-PTTAAMDKL 173


>AL117204-27|CAB55133.2|  241|Caenorhabditis elegans Hypothetical
           protein Y116A8C.43 protein.
          Length = 241

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -1

Query: 180 NLPNSFPGCSLYTQFDSHESSENFSSKNTSQFIDEIANKLAIASTADF 37
           +LP +   C+L   F   ES   F  +  + F+    N L I +  DF
Sbjct: 61  HLPYTVKRCALSEYFTWEESGTFFPFQKCNNFVFFGGNSLQILNNTDF 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,375,691
Number of Sequences: 27780
Number of extensions: 118178
Number of successful extensions: 375
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)