Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N13
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    30   0.34 
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    27   3.2  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    27   3.2  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   3.2  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    27   3.2  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    26   5.5  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    26   5.5  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   7.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   7.3  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.3  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   9.7  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    25   9.7  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 23/89 (25%), Positives = 38/89 (42%)
 Frame = -2

Query: 487  RSQEDLXNGISGNIGLNVDGNTERLVVESWLTNLEVVWVTSLNLFFGQEYTVSGIKLAIV 308
            R QED   G   N+     G  E +  E ++          L  F G+ + +S +   I+
Sbjct: 1109 RCQEDFERGWKANLPSGKAGEAEIMSDEYYVAAAIKRRGLGLVRFIGELFKLSMLSEKIM 1168

Query: 307  KECD*FLNDNIIDFNADEMKFLLRIRLQV 221
             EC   L  N+ D   +E++ L R+ + V
Sbjct: 1169 HECIKRLLGNVTDPEEEEIESLCRLLMTV 1197


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 161 DPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 310
           +P F Q Y  IVG I + K + + +P+ K     + I + V+E  VT+ D
Sbjct: 6   EPEFQQAYKEIVGSIESSKLF-EVHPELKRVLPIISIPERVLEFRVTWED 54


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 235 IRLQVMLECVNVTH-NPVI*LIECRVSKCGLVKVKRTGHEGVLVEWF 98
           I  Q  L+ +  TH NPV    EC +S+C L   K  G E  L + F
Sbjct: 233 ILFQNALDALPTTHGNPV----ECDISRCPLNACKIAGQETELADLF 275


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 473 IFLGPKYNDXGFPITLEENWHKFYELDWFTHKIT 574
           I L P  ND  +  T    WHKF++  WF   +T
Sbjct: 418 IELAPAANDIQWHNTYIGRWHKFFQ-GWFITLVT 450


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 434 DVESDIATDAVXKIFLGPKYN 496
           D E+D+ T+ V K+FL  +YN
Sbjct: 806 DTENDLVTELVEKLFLFKQYN 826


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 486 LSTTXMDSPSHWKKTGINSTNWIG 557
           LS   +   S+W++T ++ TNW+G
Sbjct: 208 LSVKAIIFASYWQQTVLSITNWLG 231


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 287 EKLVTFFDYSQFDATNSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTID-VESDIATDA 463
           E++V    + QF+A +    T+K + +  P   K R+ RL    F   +D +  D ATD 
Sbjct: 591 ERVVLLEAWKQFEAMHGTEDTRKHVSSLMPQVVKKRR-RLEDGSFEEYLDYLFPDTATDQ 649

Query: 464 VXKI 475
             K+
Sbjct: 650 GDKM 653


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 59  YEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 163
           Y  +ARH L    + FD HTF  +   FY T  RD
Sbjct: 183 YARLARHGLSEPSEMFDIHTFRENPEIFY-TFARD 216


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 442 LNVDGNTERLVVESWLTNLEVVWVTSLNLFFGQEYTVSGI---KLAIVKEC 299
           LN+   TE ++     ++  +V V S N FFG    + G+   K ++ ++C
Sbjct: 309 LNITRKTETILKSLKESSTPLVQVVSFNAFFGVMIAILGVQFFKASLNRQC 359


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 353 KEIKTSYPHNFKVRQPRLNHKPFSVTIDVESDIATDAVXKIFLGPKYNDXGFPI 514
           + I+ SYP+ F  R P+  H P +  +D  +  A + V    L P+ N    P+
Sbjct: 606 QHIQYSYPNTFVNRFPQNIHHPSANLLDASA--ALNPVQNPLLMPQQNHEHSPL 657


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 168  HSISYITGLWVTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SH 302
            +S S I   W T  HSS+  +L   R +  S +  ++  LRN  H
Sbjct: 973  NSKSVIGENWTTCLHSSLVDNLGKYRKYDGSKILDILRVLRNKRH 1017


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +3

Query: 93  HLNHSTSTPSCPVRLTF--TKPHFETLHSISYITGLWVTLT 209
           HL  S STPS    LTF  T  +  T H       LW  L+
Sbjct: 605 HLIDSISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLS 645


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,545
Number of Sequences: 5004
Number of extensions: 55362
Number of successful extensions: 172
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)