Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N12
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    95   6e-21
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    27   2.6  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    26   3.4  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   4.5  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    25   7.9  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   7.9  

>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 95.1 bits (226), Expect = 6e-21
 Identities = 50/108 (46%), Positives = 72/108 (66%), Gaps = 5/108 (4%)
 Frame = -3

Query: 568 FPVVRFK----NKKEFTARTERWFVKNANGTLLCRR-QVPLNLAWAFSIHKSQGLTLDCV 404
           +P+VRFK     ++    + E W ++  NG +   R Q+PL LA+A SIHK+QG TLD V
Sbjct: 673 WPLVRFKLPNGGERTIVVQRETWNIELPNGEVQASRSQIPLILAYAISIHKAQGQTLDRV 732

Query: 403 EMSLSKIFEAGQAYVALSRAQSLETLRVLDFDSRYVWADPNVLEFYQK 260
           ++ L ++FE GQAYVALSRA + E L+VL+F    V A P V++FY++
Sbjct: 733 KVDLGRVFEKGQAYVALSRATTQEGLQVLNFSPAKVMAHPKVVQFYKQ 780


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 289 DPNVLEFYQKFRRRLQQMEIVPLGRPLADKTNKKIRLREILE 164
           D +V ++   FRR+L      P  RPL  + N K+R   I E
Sbjct: 402 DQDVPQYKCDFRRKLIYFRSQPGMRPLPGQCNVKVRRDHIFE 443


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 289 DPNVLEFYQKFRRRLQQMEIVPLGRPLADKTNKKIRLREILE 164
           D NV ++ + FRR+L      P   PL  + + K+R   I E
Sbjct: 383 DQNVPQYKRDFRRKLIYFLSQPALHPLPGQCHIKVRRNHIFE 424


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -1

Query: 396 LYLKFLKPDRHMLP*AEHKV*KH*EFWILIPVMYGLILMF*NFTRSLEGVCNKW 235
           LY + L+P R+ LP   H +  +   W  IP  YGL+    +    L+  C  W
Sbjct: 336 LYTELLRPMRYKLPRFVHGLTNNRTLW--IPNAYGLL----SKHSHLQSFCRDW 383


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -3

Query: 403 EMSLSKIFEAGQAYVALSRAQSLETLRVLDFDSRYVWADPNVLEFYQKFRR 251
           ++SLS +++A   YV   +  SL   R +       W D    E   +F R
Sbjct: 699 DLSLSPVYKAAIGYVQEDKGISLRFPRFIRIREDKSWEDATTSEQVSEFYR 749


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = -3

Query: 556 RFKNKKEFTARTERWFVKNANGTLLCRRQVPLNLAW 449
           +F N +      E+W+ + ANG+ +C         W
Sbjct: 562 QFSNSESNKNDFEKWYTRYANGSPICSEMGKKEFFW 597


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,425
Number of Sequences: 5004
Number of extensions: 35472
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)