Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N12
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53823| Best HMM Match : No HMM Matches (HMM E-Value=.)             132   3e-31
SB_19826| Best HMM Match : DUF889 (HMM E-Value=0.053)                  80   1e-15
SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.)               56   2e-08
SB_50259| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   7e-06
SB_28309| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_40864| Best HMM Match : Pox_G5 (HMM E-Value=0.48)                   42   4e-04
SB_36931| Best HMM Match : FabA (HMM E-Value=5.5)                      38   0.004
SB_48260| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.006
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)           37   0.010
SB_36343| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.013
SB_28626| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.023
SB_50552| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00012)         30   1.2  
SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)                 30   1.5  
SB_45676| Best HMM Match : Apo-VLDL-II (HMM E-Value=0.61)              29   2.0  
SB_11635| Best HMM Match : Borrelia_P13 (HMM E-Value=9.9)              29   2.0  
SB_55122| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_10124| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_33569| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  

>SB_53823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score =  132 bits (318), Expect = 3e-31
 Identities = 60/105 (57%), Positives = 78/105 (74%)
 Frame = -3

Query: 565 PVVRFKNKKEFTARTERWFVKNANGTLLCRRQVPLNLAWAFSIHKSQGLTLDCVEMSLSK 386
           P+V+F    E     E+W ++ A G ++ RRQ+PL LAWA SIHKSQG+TLDC+E+SL++
Sbjct: 496 PIVKFTCGVEKAITAEKWVIRTAGGVMVSRRQLPLKLAWAVSIHKSQGMTLDCLEISLAR 555

Query: 385 IFEAGQAYVALSRAQSLETLRVLDFDSRYVWADPNVLEFYQKFRR 251
           +FE GQAYVALSRA+SL+ LRVLDFD +   A P VL FY + RR
Sbjct: 556 VFEFGQAYVALSRARSLQGLRVLDFDKKCARAHPEVLRFYGRLRR 600


>SB_19826| Best HMM Match : DUF889 (HMM E-Value=0.053)
          Length = 203

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 37/75 (49%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
 Frame = -3

Query: 565 PVVRFKNKKEFTARTERWFVKNANGTLLCRR-QVPLNLAWAFSIHKSQGLTLDCVEMSLS 389
           P+V+F + KE T     W ++N+ G +L RR Q+PL  AWA +IHKSQG+++D +++ L 
Sbjct: 128 PIVKFTDGKERTISEMDWNLENSAGQVLARRVQIPLKPAWAITIHKSQGMSIDLLQVDLR 187

Query: 388 KIFEAGQAYVALSRA 344
            +F  GQAYVALSRA
Sbjct: 188 NVFAQGQAYVALSRA 202


>SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 985

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 25/61 (40%), Positives = 40/61 (65%)
 Frame = -3

Query: 478  RRQVPLNLAWAFSIHKSQGLTLDCVEMSLSKIFEAGQAYVALSRAQSLETLRVLDFDSRY 299
            RRQ P+ L+WA ++H++QGLTLD V ++ S+ F  G  YV LSR +    + + +FD  +
Sbjct: 837  RRQFPIQLSWAITVHEAQGLTLDKVVLTCSREFVFGLTYVGLSRVRRSCDVELRNFDPNF 896

Query: 298  V 296
            +
Sbjct: 897  L 897


>SB_50259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 713

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
 Frame = -3

Query: 478 RRQVPLNLAWAFSIHKSQGLTLDCVEMSLSKIFEA-GQAYVALSRAQSLET 329
           R+Q+P  LAW+ +IHKSQGLTL    + + K  +  G +YVALSR ++L +
Sbjct: 419 RQQLPRKLAWSLTIHKSQGLTLPKAWVDIGKSEKTPGISYVALSRVKALSS 469


>SB_28309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
 Frame = -3

Query: 478 RRQVPLNLAWAFSIHKSQGLTLDCVEMSLSKIFEA-GQAYVALSRAQSLET 329
           R+Q+P  LAW+ +IHKS+G+TL    + + K  +  G +Y ALSR ++L +
Sbjct: 341 RQQLPFKLAWSLTIHKSEGITLPKAWVDIGKSEKTPGISYAALSRVKALSS 391


>SB_40864| Best HMM Match : Pox_G5 (HMM E-Value=0.48)
          Length = 518

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 31/122 (25%), Positives = 48/122 (39%)
 Frame = -3

Query: 550 KNKKEFTARTERWFVKNANGTLLCRRQVPLNLAWAFSIHKSQGLTLDCVEMSLSKIFEAG 371
           KN       T ++ +       +  RQ PL  A A +IH+ QG TLD   +         
Sbjct: 223 KNWTPILEITRQFRINKKTQVQILHRQFPLRPAAAKTIHRCQGNTLDSAVVDFPTSTRKH 282

Query: 370 QAYVALSRAQSLETLRVLDFDSRYVWADPNVLEFYQKFRRRLQQMEIVPLGRPLADKTNK 191
             YV LSR ++   L +L+ +   +     V+    + R   Q + +V L       T K
Sbjct: 283 MHYVGLSRVRNHSNLHILNLNECKIKVSEKVVIKMNRLRTEAQLVPLVSLQNVDLSNTTK 342

Query: 190 KI 185
            I
Sbjct: 343 II 344


>SB_36931| Best HMM Match : FabA (HMM E-Value=5.5)
          Length = 702

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -3

Query: 496 NGTLLCRRQVPLNLAWAFSIHKSQGLTLD-CVEMSLSKIFEAGQAYVALSRAQSLETLRV 320
           N     R  +P+ L +A +I K+QG TL  C+    S    A   YVALSR + LE++  
Sbjct: 627 NNVTFKRTVLPVVLGYAITICKAQGQTLHKCIVWMDSDFVPAASGYVALSRVRKLESIHF 686

Query: 319 L 317
           +
Sbjct: 687 M 687


>SB_48260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = -3

Query: 478 RRQVPLNLAWAFSIHKSQGLTLDCVEMSLSK 386
           R Q+PL LAW  +IHKSQGLT     + + K
Sbjct: 146 RHQLPLKLAWPITIHKSQGLTFSKAWIDIGK 176


>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
          Length = 828

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 10/57 (17%)
 Frame = -3

Query: 478 RRQVPLNLAWAFSIHKSQGLTLD------CVEMSLSK-IFEA---GQAYVALSRAQS 338
           R QVPL LAW  +IHK QG+T+        V +   K  FEA   G  +VALSRA+S
Sbjct: 705 RVQVPLRLAWGMTIHKCQGMTVGEGEPFRYVVIHPGKYAFEAKNPGALFVALSRAKS 761


>SB_36343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 10/57 (17%)
 Frame = -3

Query: 478 RRQVPLNLAWAFSIHKSQGLT------LDCVEMSLSK-IFEA---GQAYVALSRAQS 338
           R QVPL LAW  +IHK QG+T      L  V +   K  FEA   G  +VALSRA++
Sbjct: 167 RVQVPLRLAWGMTIHKCQGMTVGEGEPLRYVVIHPGKYAFEAKNQGALFVALSRAKT 223


>SB_28626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 10/57 (17%)
 Frame = -3

Query: 478  RRQVPLNLAWAFSIHKSQGLTLD------CVEMSLSK-IFEA---GQAYVALSRAQS 338
            R QVPL LAW  +IHK QG+T+        V +   K  FE+   G  +VALSRA+S
Sbjct: 912  RVQVPLRLAWGMTIHKCQGMTVGEGEPFRYVVIHPGKYAFESKNPGALFVALSRAKS 968


>SB_50552| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00012)
          Length = 966

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -3

Query: 484 LCRRQVPLNLAWAFSIHKSQGLTLDCVEMSL-SKIFEAGQAYVALSRAQSLETLRVLD 314
           L R+Q PL    A +IH+SQG T   + ++  +K     + YV LSR  +++ L + D
Sbjct: 652 LMRKQFPLRPDAAKTIHRSQGDTESRIVVNFETKRAIPHKHYVGLSRVTTIDGLYITD 709


>SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)
          Length = 2253

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -3

Query: 478 RRQVPLNLAWAFSIHKSQGLTLDCVEMSL-SKIFEAGQAYVALSRAQSLETLRVLD 314
           R+Q PL  A A +IH+SQG T   + ++  +K       YV LSR  +++ L + D
Sbjct: 136 RKQFPLRPAAAKTIHRSQGDTESRIVVNFETKRAIPHIHYVGLSRVTTIDGLYITD 191


>SB_45676| Best HMM Match : Apo-VLDL-II (HMM E-Value=0.61)
          Length = 93

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 22/66 (33%), Positives = 27/66 (40%)
 Frame = +3

Query: 174 SLNLIFLLVLSARGLPRGTISICCKRLLNFW*NSKTLGSAHT*RESKSKTLNVSRLCALL 353
           S N  FL   S +G PR        RLL  W    T G+ HT   + S+T   +RL    
Sbjct: 14  SANAAFLFATSFKGEPRAAAKCFLNRLLTSW----TEGTRHT---TLSETFAFARLSRFT 66

Query: 354 KATYAC 371
             T  C
Sbjct: 67  ANTVLC 72


>SB_11635| Best HMM Match : Borrelia_P13 (HMM E-Value=9.9)
          Length = 295

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -3

Query: 478 RRQVPLNLAWAFSIHKSQGLTLDCVEMSL-SKIFEAGQAYVALSRAQSLETLRVLD 314
           R+Q PL  A A +IH+SQG T   + ++  +K       Y+ LSR  +++ L + D
Sbjct: 136 RKQFPLRPAAAKTIHRSQGDTESRIVVNFETKRAIPHIHYIGLSRVTTIDGLYITD 191


>SB_55122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -3

Query: 478 RRQVPLNLAWAFSIHKSQGLTLDCVEMSL-SKIFEAGQAYVALSRAQSLETLRVLD 314
           R+Q PL  A A +IH+SQG T   + ++  +K       YV LSR  +++ L + D
Sbjct: 136 RKQFPLRPAAAKTIHRSQGDTESRIVVNFETKRAIPHIHYVGLSRVITIDGLYITD 191


>SB_10124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -3

Query: 478 RRQVPLNLAWAFSIHKSQGLTLDCVEMSL-SKIFEAGQAYVALSRAQSLETLRVLD 314
           R+Q PL  A A +IH+SQG T   + ++  +K       YV LSR  +++ L + D
Sbjct: 229 RKQFPLRPAAAKTIHRSQGDTESRIVVNFETKRAIPHIHYVGLSRVITIDGLYITD 284


>SB_33569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 523 TERWFVKNANGTLLCRRQVPLNLAWAFSIHKSQGL 419
           TE  F+ + + T LCR   P  L W +   +  G+
Sbjct: 40  TEETFISSNHSTTLCRLNEPYLLYWRYGAQEDNGM 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,028,336
Number of Sequences: 59808
Number of extensions: 249243
Number of successful extensions: 509
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)