Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N12
         (573 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB185927-1|BAE47455.1|  707|Homo sapiens PIF1 DNA helicase isofo...   129   8e-30
DQ437529-1|ABD92708.1|  641|Homo sapiens DNA helicase PIF1 protein.   128   1e-29
AY498716-1|AAS77398.1|  641|Homo sapiens PIF1/RRM3 DNA helicase-...   128   1e-29
AF108138-1|AAD44047.1|  374|Homo sapiens DNA helicase homolog pr...   128   1e-29
AB185926-1|BAE47454.1|  641|Homo sapiens PIF1 DNA helicase isofo...   128   1e-29

>AB185927-1|BAE47455.1|  707|Homo sapiens PIF1 DNA helicase isoform
           beta protein.
          Length = 707

 Score =  129 bits (311), Expect = 8e-30
 Identities = 66/124 (53%), Positives = 81/124 (65%)
 Frame = -3

Query: 571 GFPVVRFKNKKEFTARTERWFVKNANGTLLCRRQVPLNLAWAFSIHKSQGLTLDCVEMSL 392
           G P VRF          +RW V+   G LL R+Q+PL LAWA SIHKSQG+TLDCVE+SL
Sbjct: 510 GLPQVRFLCGVTEVIHADRWTVQATGGQLLSRQQLPLQLAWAMSIHKSQGMTLDCVEISL 569

Query: 391 SKIFEAGQAYVALSRAQSLETLRVLDFDSRYVWADPNVLEFYQKFRRRLQQMEIVPLGRP 212
            ++F +GQAYVALSRA+SL+ LRVLDFD   V  DP VL FY   RR  + + +   GR 
Sbjct: 570 GRVFASGQAYVALSRARSLQGLRVLDFDPMAVRCDPRVLHFYATLRRG-RSLSLAAEGRG 628

Query: 211 LADK 200
             D+
Sbjct: 629 NEDR 632


>DQ437529-1|ABD92708.1|  641|Homo sapiens DNA helicase PIF1 protein.
          Length = 641

 Score =  128 bits (310), Expect = 1e-29
 Identities = 63/107 (58%), Positives = 74/107 (69%)
 Frame = -3

Query: 571 GFPVVRFKNKKEFTARTERWFVKNANGTLLCRRQVPLNLAWAFSIHKSQGLTLDCVEMSL 392
           G P VRF          +RW V+   G LL R+Q+PL LAWA SIHKSQG+TLDCVE+SL
Sbjct: 510 GLPQVRFLCGVTEVIHADRWTVQATGGQLLSRQQLPLQLAWAMSIHKSQGMTLDCVEISL 569

Query: 391 SKIFEAGQAYVALSRAQSLETLRVLDFDSRYVWADPNVLEFYQKFRR 251
            ++F +GQAYVALSRA+SL+ LRVLDFD   V  DP VL FY   RR
Sbjct: 570 GRVFASGQAYVALSRARSLQGLRVLDFDPMAVRCDPRVLHFYATLRR 616


>AY498716-1|AAS77398.1|  641|Homo sapiens PIF1/RRM3 DNA
           helicase-like protein protein.
          Length = 641

 Score =  128 bits (310), Expect = 1e-29
 Identities = 63/107 (58%), Positives = 74/107 (69%)
 Frame = -3

Query: 571 GFPVVRFKNKKEFTARTERWFVKNANGTLLCRRQVPLNLAWAFSIHKSQGLTLDCVEMSL 392
           G P VRF          +RW V+   G LL R+Q+PL LAWA SIHKSQG+TLDCVE+SL
Sbjct: 510 GLPQVRFLCGVTEVIHADRWTVQATGGQLLSRQQLPLQLAWAMSIHKSQGMTLDCVEISL 569

Query: 391 SKIFEAGQAYVALSRAQSLETLRVLDFDSRYVWADPNVLEFYQKFRR 251
            ++F +GQAYVALSRA+SL+ LRVLDFD   V  DP VL FY   RR
Sbjct: 570 GRVFASGQAYVALSRARSLQGLRVLDFDPMAVRCDPRVLHFYATLRR 616


>AF108138-1|AAD44047.1|  374|Homo sapiens DNA helicase homolog
           protein.
          Length = 374

 Score =  128 bits (310), Expect = 1e-29
 Identities = 63/107 (58%), Positives = 74/107 (69%)
 Frame = -3

Query: 571 GFPVVRFKNKKEFTARTERWFVKNANGTLLCRRQVPLNLAWAFSIHKSQGLTLDCVEMSL 392
           G P VRF          +RW V+   G LL R+Q+PL LAWA SIHKSQG+TLDCVE+SL
Sbjct: 243 GLPQVRFLCGVTEVIHADRWTVQATGGQLLSRQQLPLQLAWAMSIHKSQGMTLDCVEISL 302

Query: 391 SKIFEAGQAYVALSRAQSLETLRVLDFDSRYVWADPNVLEFYQKFRR 251
            ++F +GQAYVALSRA+SL+ LRVLDFD   V  DP VL FY   RR
Sbjct: 303 GRVFASGQAYVALSRARSLQGLRVLDFDPMAVRCDPRVLHFYATLRR 349


>AB185926-1|BAE47454.1|  641|Homo sapiens PIF1 DNA helicase isoform
           alpha protein.
          Length = 641

 Score =  128 bits (310), Expect = 1e-29
 Identities = 63/107 (58%), Positives = 74/107 (69%)
 Frame = -3

Query: 571 GFPVVRFKNKKEFTARTERWFVKNANGTLLCRRQVPLNLAWAFSIHKSQGLTLDCVEMSL 392
           G P VRF          +RW V+   G LL R+Q+PL LAWA SIHKSQG+TLDCVE+SL
Sbjct: 510 GLPQVRFLCGVTEVIHADRWTVQATGGQLLSRQQLPLQLAWAMSIHKSQGMTLDCVEISL 569

Query: 391 SKIFEAGQAYVALSRAQSLETLRVLDFDSRYVWADPNVLEFYQKFRR 251
            ++F +GQAYVALSRA+SL+ LRVLDFD   V  DP VL FY   RR
Sbjct: 570 GRVFASGQAYVALSRARSLQGLRVLDFDPMAVRCDPRVLHFYATLRR 616


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,289,629
Number of Sequences: 237096
Number of extensions: 1125152
Number of successful extensions: 5591
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5591
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)