Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_N12
(573 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024751-9|AAK21508.2| 677|Caenorhabditis elegans Pif1p dna hel... 103 1e-22
AB015041-1|BAA28677.1| 677|Caenorhabditis elegans PIF1 protein. 103 1e-22
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ... 43 2e-04
AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical ... 41 5e-04
AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical ... 41 5e-04
AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical ... 41 5e-04
AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical ... 41 5e-04
Z81499-1|CAB04087.1| 471|Caenorhabditis elegans Hypothetical pr... 39 0.002
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z54342-11|CAA91146.1| 502|Caenorhabditis elegans Hypothetical p... 27 7.2
Z49913-4|CAA90147.1| 498|Caenorhabditis elegans Hypothetical pr... 27 7.2
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ... 27 7.2
>AC024751-9|AAK21508.2| 677|Caenorhabditis elegans Pif1p dna
helicase (yeast) homologprotein 1 protein.
Length = 677
Score = 103 bits (246), Expect = 1e-22
Identities = 51/106 (48%), Positives = 75/106 (70%), Gaps = 3/106 (2%)
Frame = -3
Query: 571 GFPVVRFKNKKEFTA--RTERWFVK-NANGTLLCRRQVPLNLAWAFSIHKSQGLTLDCVE 401
G P++RF ++ + + R ++ V+ + L RRQ+PL LAWA SIHKSQG+TLDC E
Sbjct: 545 GNPMIRFVSQADASIEIRRSKFSVRIPGSDAPLIRRQLPLQLAWAISIHKSQGMTLDCAE 604
Query: 400 MSLSKIFEAGQAYVALSRAQSLETLRVLDFDSRYVWADPNVLEFYQ 263
+SL ++F GQAYVALSRA+SL +R++ FD+ V A+ V++FY+
Sbjct: 605 ISLERVFADGQAYVALSRARSLAAIRIIGFDASCVRANSKVIDFYK 650
>AB015041-1|BAA28677.1| 677|Caenorhabditis elegans PIF1 protein.
Length = 677
Score = 103 bits (246), Expect = 1e-22
Identities = 51/106 (48%), Positives = 75/106 (70%), Gaps = 3/106 (2%)
Frame = -3
Query: 571 GFPVVRFKNKKEFTA--RTERWFVK-NANGTLLCRRQVPLNLAWAFSIHKSQGLTLDCVE 401
G P++RF ++ + + R ++ V+ + L RRQ+PL LAWA SIHKSQG+TLDC E
Sbjct: 545 GNPMIRFVSQADASIEIRRSKFSVRIPGSDAPLIRRQLPLQLAWAISIHKSQGMTLDCAE 604
Query: 400 MSLSKIFEAGQAYVALSRAQSLETLRVLDFDSRYVWADPNVLEFYQ 263
+SL ++F GQAYVALSRA+SL +R++ FD+ V A+ V++FY+
Sbjct: 605 ISLERVFADGQAYVALSRARSLAAIRIIGFDASCVRANSKVIDFYK 650
>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
protein Y46B2A.2 protein.
Length = 1365
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = -3
Query: 484 LCRRQVPLNLAWAFSIHKSQGLTLDCVEMSL-SKIFEAGQAYVALSRAQSLETLRVLDFD 308
L R Q P+ L++A SI+K+QG + + + + + +F GQ YVALSR ++ E L ++ F
Sbjct: 1294 LRRTQFPVRLSFALSINKAQGQSFSKIGLWIPTDVFTHGQLYVALSRVRTKEGL-IVKFS 1352
Query: 307 SRYV 296
S V
Sbjct: 1353 SNIV 1356
>AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical
protein F33H12.6 protein.
Length = 1360
Score = 41.1 bits (92), Expect = 5e-04
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = -3
Query: 484 LCRRQVPLNLAWAFSIHKSQGLTLDCVEMSL-SKIFEAGQAYVALSRAQSLETLRV 320
L R Q P+ L++A SI+K+QG + + + + + +F GQ YVALSR ++ E L V
Sbjct: 1289 LRRTQFPVRLSFALSINKAQGQSFSKIGLWIPTDVFTHGQLYVALSRVRTKEGLIV 1344
>AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical
protein ZK250.9 protein.
Length = 1466
Score = 41.1 bits (92), Expect = 5e-04
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = -3
Query: 484 LCRRQVPLNLAWAFSIHKSQGLTLDCVEMSL-SKIFEAGQAYVALSRAQSLETLRV 320
L R Q P+ L++A SI+K+QG + + + + + +F GQ YVALSR ++ E L V
Sbjct: 1395 LRRTQFPVRLSFALSINKAQGQSFSKIGLWIPTDVFTHGQLYVALSRVRTKEGLIV 1450
>AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical
protein Y16E11A.2 protein.
Length = 1466
Score = 41.1 bits (92), Expect = 5e-04
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = -3
Query: 484 LCRRQVPLNLAWAFSIHKSQGLTLDCVEMSL-SKIFEAGQAYVALSRAQSLETLRV 320
L R Q P+ L++A SI+K+QG + + + + + +F GQ YVALSR ++ E L V
Sbjct: 1395 LRRTQFPVRLSFALSINKAQGQSFSKIGLWIPTDVFTHGQLYVALSRVRTKEGLIV 1450
>AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical
protein F59H6.5 protein.
Length = 1486
Score = 41.1 bits (92), Expect = 5e-04
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = -3
Query: 484 LCRRQVPLNLAWAFSIHKSQGLTLDCVEMSL-SKIFEAGQAYVALSRAQSLETLRV 320
L R Q P+ L++A SI+K+QG + + + + + +F GQ YVALSR ++ E L V
Sbjct: 1415 LRRTQFPVRLSFALSINKAQGQSFSKIGLWIPTDVFTHGQLYVALSRVRTKEGLIV 1470
>Z81499-1|CAB04087.1| 471|Caenorhabditis elegans Hypothetical
protein F11C3.1 protein.
Length = 471
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = -3
Query: 499 ANGTLLCRRQVPLNLAWAFSIHKSQGLTLDCVEM-SLSKIFEAGQAYVALSRAQSLETLR 323
+N T Q P++L +A +IH SQG + + + + L++ FE G Y A+SR + E +
Sbjct: 395 SNNTQQSVLQFPVSLNFASTIHGSQGKSFEKLGLYKLNECFEHGMIYTAISRVRRFEDYK 454
Query: 322 VLDFDS 305
V D+
Sbjct: 455 VFTEDT 460
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
F55H12.3 protein.
Length = 2972
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = +3
Query: 333 SRLCALLKATYACPASKILDKDISTQSKVKPCDLCIENAHAKF 461
+ LC L YA P + + ST + CD C + +F
Sbjct: 1530 TNLCESLDTLYAVPNTFCVQNPTSTTPSIHRCDFCYGGENCEF 1572
>Z54342-11|CAA91146.1| 502|Caenorhabditis elegans Hypothetical
protein C08H9.5 protein.
Length = 502
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -3
Query: 319 LDFDSRYVWADPNVLEFYQKFRRRLQQMEIVPLGRPLADKTNKKIRLREILEKQ 158
LD +SR + D +EF++K + + L R L +TN ++RL L +
Sbjct: 446 LDMNSRTTFLD--CIEFFEKELKTTSNEYFLDLTRKLRSETNNQLRLSNWLSDE 497
>Z49913-4|CAA90147.1| 498|Caenorhabditis elegans Hypothetical
protein ZK938.5 protein.
Length = 498
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -3
Query: 319 LDFDSRYVWADPNVLEFYQKFRRRLQQMEIVPLGRPLADKTNKKIRLREILEKQ 158
LD +SR + D +EF++K + + L R L +TN ++RL L +
Sbjct: 442 LDMNSRTTFLD--CIEFFEKELKTTSNEYFLDLTRKLRSETNNQLRLSNWLSDE 493
>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform b protein.
Length = 1090
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -3
Query: 532 TARTERWFVKNANGTLLCRRQVPLNLAWAFSIHKSQGLTLDCVEMSLSK-IFEAGQAYVA 356
+AR + FV+ +G +L +++ L F +HK + L C M + K IFE + +
Sbjct: 910 SARNQE-FVRKLDGPILSLQELLLQYVVPFKLHKIKLSLLHCAGMYVEKHIFETWEDIIQ 968
Query: 355 LSRAQS 338
+ A S
Sbjct: 969 DAIASS 974
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,600,977
Number of Sequences: 27780
Number of extensions: 190834
Number of successful extensions: 446
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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