Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N11
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...   130   8e-32
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   4.5  

>SPAC13G6.06c |||glycine cleavage complex subunit
            P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score =  130 bits (315), Expect = 8e-32
 Identities = 59/103 (57%), Positives = 70/103 (67%)
 Frame = +2

Query: 74   KLSCLMLTYPSTFGVFEERAADVCALVHKHGGQVYLDGANMNAQVGLCRPGDYGSDVSHL 253
            KL+  M+TYPSTFG+FE    +   ++H+HGGQVY DGANMNA VGLC+ GD G+DV HL
Sbjct: 706  KLAAFMVTYPSTFGIFEPDVKEALEVIHEHGGQVYFDGANMNAMVGLCKAGDIGADVCHL 765

Query: 254  NLHKTFCIXXXXXXXXXXXXXVKAHLAPFLPSHPVIDPLGRFG 382
            NLHKTFCI             VK HLA FLPSHPV+   G+ G
Sbjct: 766  NLHKTFCIPHGGGGPGVGPICVKKHLADFLPSHPVVSCGGKNG 808



 Score = 28.7 bits (61), Expect = 0.49
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +3

Query: 405 SVSAAPFGSSAILPIS 452
           SVS++PFGS+ ILPIS
Sbjct: 811 SVSSSPFGSAGILPIS 826


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 457 PKEMGSIADDPKGAALTDPKLCASSPKSAKRIN 359
           PK   SIA  P GA+   P+   +SP     +N
Sbjct: 271 PKRPASIAPQPTGASTIAPQPTGTSPSPPVEMN 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,197
Number of Sequences: 5004
Number of extensions: 39429
Number of successful extensions: 72
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)