Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N11
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0741 - 24016204-24016298,24016408-24016525,24016805-240169...   130   4e-31
01_06_0461 + 29553709-29554905,29555051-29555296,29555387-295554...   130   4e-31
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649...    28   3.4  
03_05_0282 + 22685682-22685897,22685960-22686514                       28   4.5  

>06_03_0741 -
           24016204-24016298,24016408-24016525,24016805-24016903,
           24016992-24017117,24017200-24017277,24017366-24017554,
           24018186-24018338,24018785-24018898,24019576-24019761,
           24019845-24019970,24020053-24020248,24020338-24020438,
           24020533-24020610,24020707-24020952,24021063-24022253
          Length = 1031

 Score =  130 bits (315), Expect = 4e-31
 Identities = 59/95 (62%), Positives = 70/95 (73%)
 Frame = +2

Query: 77  LSCLMLTYPSTFGVFEERAADVCALVHKHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLN 256
           L+ LM+TYPST GV+EE   ++C ++H++GGQVY+DGANMNAQVGL  PG  G+DV HLN
Sbjct: 704 LAALMVTYPSTHGVYEEGIDEICMIIHENGGQVYMDGANMNAQVGLTSPGFIGADVCHLN 763

Query: 257 LHKTFCIXXXXXXXXXXXXXVKAHLAPFLPSHPVI 361
           LHKTFCI             VK HLAPFLPSHPVI
Sbjct: 764 LHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVI 798



 Score = 30.7 bits (66), Expect = 0.64
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +3

Query: 378 LGDEAHSFGSVSAAPFGSSAILPIS 452
           L ++    G++SAAP+GS+ ILPIS
Sbjct: 805 LPEKTDPLGTISAAPWGSALILPIS 829


>01_06_0461 +
           29553709-29554905,29555051-29555296,29555387-29555464,
           29555557-29555657,29555745-29555940,29556022-29556147,
           29556231-29556416,29556921-29557034,29557522-29557674,
           29558287-29558475,29558568-29558645,29558728-29558853,
           29558942-29559040,29559315-29559432,29559531-29559625
          Length = 1033

 Score =  130 bits (315), Expect = 4e-31
 Identities = 59/95 (62%), Positives = 70/95 (73%)
 Frame = +2

Query: 77  LSCLMLTYPSTFGVFEERAADVCALVHKHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLN 256
           L+ LM+TYPST GV+EE   ++C ++H++GGQVY+DGANMNAQVGL  PG  G+DV HLN
Sbjct: 706 LAALMVTYPSTHGVYEEGIDEICRIIHENGGQVYMDGANMNAQVGLTSPGFIGADVCHLN 765

Query: 257 LHKTFCIXXXXXXXXXXXXXVKAHLAPFLPSHPVI 361
           LHKTFCI             VK HLAPFLPSHPVI
Sbjct: 766 LHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVI 800



 Score = 30.7 bits (66), Expect = 0.64
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +3

Query: 378 LGDEAHSFGSVSAAPFGSSAILPIS 452
           L ++    G++SAAP+GS+ ILPIS
Sbjct: 807 LPEKTDPLGTISAAPWGSALILPIS 831


>01_05_0024 -
           17262504-17263308,17264251-17264399,17264879-17264978,
           17265829-17265953,17267565-17267743,17269648-17270698
          Length = 802

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 207 TCAFILAPSR*TCPPCLCTSAHTSAARSSNTPNV 106
           T A ++APS    PP     +H +  RSS+TPN+
Sbjct: 88  TAAVLIAPS--PPPPPFLDFSHATLQRSSSTPNI 119


>03_05_0282 + 22685682-22685897,22685960-22686514
          Length = 256

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 163 MFVYKCAHVRGSLLEHAERTRIRQHQTG*FPLCSSTI 53
           +F +K AH R    E+  + +I Q  +G FP+C+ T+
Sbjct: 160 IFAWKLAHDRLPTWENKRKRKIEQ--SGIFPICAQTV 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,718,101
Number of Sequences: 37544
Number of extensions: 279087
Number of successful extensions: 628
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)