Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N11
         (483 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27105| Best HMM Match : GDC-P (HMM E-Value=0)                      142   2e-34
SB_313| Best HMM Match : Beta_elim_lyase (HMM E-Value=2.7)            119   1e-27
SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84)                   33   0.093
SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_33123| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=7.9)           27   6.1  

>SB_27105| Best HMM Match : GDC-P (HMM E-Value=0)
          Length = 767

 Score =  142 bits (343), Expect = 2e-34
 Identities = 61/98 (62%), Positives = 72/98 (73%)
 Frame = +2

Query: 74  KLSCLMLTYPSTFGVFEERAADVCALVHKHGGQVYLDGANMNAQVGLCRPGDYGSDVSHL 253
           +L+C+M+TYPST G+FE    D+C +VH HGGQVYLDGAN+NAQVGLCRP DYG+DV H 
Sbjct: 461 ELACIMVTYPSTNGIFEAGIRDICDIVHYHGGQVYLDGANLNAQVGLCRPADYGADVMHS 520

Query: 254 NLHKTFCIXXXXXXXXXXXXXVKAHLAPFLPSHPVIDP 367
           NLHKTFCI             VK HL P+LPSHPV+ P
Sbjct: 521 NLHKTFCIPHGGGGPGMGPIGVKKHLIPYLPSHPVVPP 558



 Score = 33.9 bits (74), Expect = 0.071
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +3

Query: 390 AHSFGSVSAAPFGSSAILPIS 452
           A  FG +S AP+GSSAILPIS
Sbjct: 566 AKPFGVISGAPYGSSAILPIS 586


>SB_313| Best HMM Match : Beta_elim_lyase (HMM E-Value=2.7)
          Length = 384

 Score =  119 bits (287), Expect = 1e-27
 Identities = 49/68 (72%), Positives = 58/68 (85%)
 Frame = +2

Query: 74  KLSCLMLTYPSTFGVFEERAADVCALVHKHGGQVYLDGANMNAQVGLCRPGDYGSDVSHL 253
           +L+C+M+TYPST G+FE    D+C +VH HGGQVYLDGAN+NAQVGLCRP DYG+DV H 
Sbjct: 285 ELACIMVTYPSTNGIFEAGIRDICDIVHYHGGQVYLDGANLNAQVGLCRPADYGADVMHS 344

Query: 254 NLHKTFCI 277
           NLHKTFCI
Sbjct: 345 NLHKTFCI 352


>SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84)
          Length = 649

 Score = 33.5 bits (73), Expect = 0.093
 Identities = 20/58 (34%), Positives = 32/58 (55%)
 Frame = -1

Query: 228 SPGRHNPTCAFILAPSR*TCPPCLCTSAHTSAARSSNTPNVLGYVSIKQDNFHYVLLP 55
           SPGR+ P   ++   S+ T P CL  +   S+A +S + +VL  VS ++ +   V LP
Sbjct: 177 SPGRNTPDDIYVKHTSQVTMPECLRRTLSDSSAAASVSTHVLRPVSPRRTSSFPVSLP 234


>SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1347

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = -3

Query: 481  WAHQX*YKPKEMGSIADDPKGA-ALTDPKLCASSPKSAKRINNRV*RQEWSQVSFYPNRT 305
            W  +  + PK++GS+A +P  A +L    + A+S K    +     + EW+      +R 
Sbjct: 968  WRPEAAWDPKKLGSLAKEPSTAPSLPCDLVAATSAKMYLAVQGGSGKTEWANDLARDHRN 1027

Query: 304  HTRAATAVRNTEGFM 260
            + R A   +    ++
Sbjct: 1028 NPRLAVKAQTYHHYL 1042


>SB_33123| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=7.9)
          Length = 271

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 168 PPCLCTSAHTSAARSSNTPNVLGYVSIKQDNFHYVLLPYP 49
           PP   T+   +A  S++T +    V+ +Q+N+ +   PYP
Sbjct: 10  PPAEQTAVEKAAVTSNDTVSPNNSVTAQQNNYLHTTCPYP 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,634,751
Number of Sequences: 59808
Number of extensions: 318988
Number of successful extensions: 660
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)