Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N11
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23510-11|AAO38610.1|  444|Caenorhabditis elegans Hypothetical p...   147   4e-36
U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical p...   147   4e-36
U47144-1|AAB52616.2|  448|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z81041-3|CAB02791.1|  713|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine re...    27   7.1  
AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U23510-11|AAO38610.1|  444|Caenorhabditis elegans Hypothetical
           protein R12C12.1b protein.
          Length = 444

 Score =  147 bits (356), Expect = 4e-36
 Identities = 68/101 (67%), Positives = 74/101 (73%)
 Frame = +2

Query: 74  KLSCLMLTYPSTFGVFEERAADVCALVHKHGGQVYLDGANMNAQVGLCRPGDYGSDVSHL 253
           +L+ +M+TYPST GVFE    DVC  VH+HGGQVYLDGANMNAQVGLCRPGDYGSDVSHL
Sbjct: 133 QLAAIMVTYPSTHGVFESSIRDVCDKVHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHL 192

Query: 254 NLHKTFCIXXXXXXXXXXXXXVKAHLAPFLPSHPVIDPLGR 376
           NLHKTFCI             VK HLAPFLP H V+   GR
Sbjct: 193 NLHKTFCIPHGGGGPGVGPIGVKKHLAPFLPGHSVVPVDGR 233


>U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical
           protein R12C12.1a protein.
          Length = 979

 Score =  147 bits (356), Expect = 4e-36
 Identities = 68/101 (67%), Positives = 74/101 (73%)
 Frame = +2

Query: 74  KLSCLMLTYPSTFGVFEERAADVCALVHKHGGQVYLDGANMNAQVGLCRPGDYGSDVSHL 253
           +L+ +M+TYPST GVFE    DVC  VH+HGGQVYLDGANMNAQVGLCRPGDYGSDVSHL
Sbjct: 668 QLAAIMVTYPSTHGVFESSIRDVCDKVHEHGGQVYLDGANMNAQVGLCRPGDYGSDVSHL 727

Query: 254 NLHKTFCIXXXXXXXXXXXXXVKAHLAPFLPSHPVIDPLGR 376
           NLHKTFCI             VK HLAPFLP H V+   GR
Sbjct: 728 NLHKTFCIPHGGGGPGVGPIGVKKHLAPFLPGHSVVPVDGR 768


>U47144-1|AAB52616.2|  448|Caenorhabditis elegans Hypothetical
           protein ZC53.1 protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 430 DPKGAALTDPKLCASSPKSAKRINNRV*RQEWSQVSFYPNRTHTRAAT 287
           DP+ + LTDP + +SSP    ++     RQ   Q    P+R+ +R ++
Sbjct: 111 DPRPSQLTDPSVRSSSPSRIDQL-----RQFLQQTGSLPSRSESRVSS 153


>Z81041-3|CAB02791.1|  713|Caenorhabditis elegans Hypothetical
           protein C27A7.5a protein.
          Length = 713

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
 Frame = -1

Query: 216 HNPTCAFILAPSR*TCPP-----CLCTSAHTSAARSSNTP 112
           + P  AFI   S  TCPP     C CTS   S  +S  +P
Sbjct: 20  YKPKSAFIKKMSDGTCPPINIRRCSCTSDGLSPKKSLTSP 59


>AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine
           receptor, class t protein62 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = +1

Query: 250 SKPT*-NLLYSSRRWRPWYG---SYWGKSSLG-SIPAVTPCY*SAWQIWE 384
           S PT  NL +  RRW  W G   S+W    L  + P  T  Y   W  W+
Sbjct: 121 SSPTLENLFFGGRRWMIWIGIATSFWVLFVLALASPWATIRYIPDWYSWD 170


>AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical
           protein H16O14.1 protein.
          Length = 977

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 271 LYSSRRWRPWYGSY-WGKSSLGSIPAVTPCY*SAW 372
           L  S  WRP +  + W  S +G+I  V   + SAW
Sbjct: 478 LLKSPGWRPGFRYFHWSLSMIGAILCVAVMFISAW 512


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,284,042
Number of Sequences: 27780
Number of extensions: 222938
Number of successful extensions: 478
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)