Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N11
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   5.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   5.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.1  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 107 YSDTSASNRIISTMFFYHI 51
           YS+T  S+ ++   FFY I
Sbjct: 186 YSETGPSHCVVCQNFFYQI 204


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = +1

Query: 265 NLLYSSRRWRPWYGSYW 315
           +L   + R  PW+  YW
Sbjct: 269 SLTPDTNRRNPWFSEYW 285


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = +1

Query: 265 NLLYSSRRWRPWYGSYW 315
           NL   + R  PW+  +W
Sbjct: 414 NLTVENNRRNPWFVEFW 430


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = +1

Query: 265 NLLYSSRRWRPWYGSYW 315
           +L   + R  PW+  YW
Sbjct: 359 SLTPDTNRRNPWFSEYW 375


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 15  TPAGDIDMAHLKDMVEE 65
           TP G++  A LKD V+E
Sbjct: 170 TPIGNLSHALLKDPVKE 186


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 15  TPAGDIDMAHLKDMVEE 65
           TP G++  A LKD V+E
Sbjct: 223 TPIGNLSHALLKDPVKE 239


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 92  LTYPSTFGVFEERAADVCALVHKHGGQVY 178
           LTY    G  +ER +++   +   G  VY
Sbjct: 455 LTYSQEIGDRQERESELVPYLENKGNGVY 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,036
Number of Sequences: 438
Number of extensions: 2555
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)