Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N11
         (483 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]...   130   4e-31
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]...   130   5e-31
At1g11310.1 68414.m01299 seven transmembrane MLO family protein ...    35   0.025
At1g61560.1 68414.m06935 seven transmembrane MLO family protein ...    30   0.94 
At2g39200.1 68415.m04815 seven transmembrane MLO family protein ...    28   2.9  
At1g72090.1 68414.m08333 radical SAM domain-containing protein /...    28   3.8  
At5g44600.1 68418.m05465 expressed protein                             27   6.6  

>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
            putative / glycine decarboxylase, putative / glycine
            cleavage system P-protein, putative strong similarity to
            SP|P26969 Glycine dehydrogenase [decarboxylating],
            mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
            contains Pfam profile PF02347: Glycine cleavage system
            P-protein
          Length = 1044

 Score =  130 bits (315), Expect = 4e-31
 Identities = 61/99 (61%), Positives = 72/99 (72%)
 Frame = +2

Query: 77   LSCLMLTYPSTFGVFEERAADVCALVHKHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLN 256
            L+ LM+TYPST GV+EE   ++C ++H++GGQVY+DGANMNAQVGL  PG  G+DV HLN
Sbjct: 718  LAALMVTYPSTHGVYEEGIDEICNIIHENGGQVYMDGANMNAQVGLTSPGFIGADVCHLN 777

Query: 257  LHKTFCIXXXXXXXXXXXXXVKAHLAPFLPSHPVIDPLG 373
            LHKTFCI             VK HLAPFLPSHPVI P G
Sbjct: 778  LHKTFCIPHGGGGPGMGPIGVKQHLAPFLPSHPVI-PTG 815



 Score = 30.3 bits (65), Expect = 0.71
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +3

Query: 384 DEAHSFGSVSAAPFGSSAILPIS 452
           ++    G++SAAP+GS+ ILPIS
Sbjct: 821 EQTSPLGTISAAPWGSALILPIS 843


>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
            putative / glycine decarboxylase, putative / glycine
            cleavage system P-protein, putative strong similarity to
            SP|P49361 Glycine dehydrogenase [decarboxylating] A,
            mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei};
            contains Pfam profile PF02347: Glycine cleavage system
            P-protein
          Length = 1037

 Score =  130 bits (314), Expect = 5e-31
 Identities = 61/99 (61%), Positives = 72/99 (72%)
 Frame = +2

Query: 77   LSCLMLTYPSTFGVFEERAADVCALVHKHGGQVYLDGANMNAQVGLCRPGDYGSDVSHLN 256
            L+ LM+TYPST GV+EE   ++C ++H++GGQVY+DGANMNAQVGL  PG  G+DV HLN
Sbjct: 712  LAALMVTYPSTHGVYEEGIDEICNIIHENGGQVYMDGANMNAQVGLTSPGFIGADVCHLN 771

Query: 257  LHKTFCIXXXXXXXXXXXXXVKAHLAPFLPSHPVIDPLG 373
            LHKTFCI             VK HLAPFLPSHPVI P G
Sbjct: 772  LHKTFCIPHGGGGPGMGPIGVKNHLAPFLPSHPVI-PTG 809



 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +3

Query: 402 GSVSAAPFGSSAILPIS 452
           G++SAAP+GS+ ILPIS
Sbjct: 821 GAISAAPWGSALILPIS 837


>At1g11310.1 68414.m01299 seven transmembrane MLO family protein /
           MLO-like protein 2 (MLO2) idenctical to membrane protein
           Mlo2 [Arabidopsis thaliana] gi|14091574|gb|AAK53795;
           similar to Mlo [Hordeum vulgare subsp. vulgare]
           gi|1877221|emb|CAB06083 SWISS-PROT:P93766
          Length = 573

 Score = 35.1 bits (77), Expect = 0.025
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 377 FGRRGT*FWIS*RCAFWIVCYTTHFFGLI 463
           FGRR   FW   R   WIVC+   FFG +
Sbjct: 221 FGRRHLNFWSKTRVTLWIVCFFRQFFGSV 249


>At1g61560.1 68414.m06935 seven transmembrane MLO family protein /
           MLO-like protein 6 (MLO6) idenctical to membrane protein
           Mlo6 [Arabidopsis thaliana] gi|14091582|gb|AAK53799;
           similar to MLO protein SWISS-PROT:P93766,
           NCBI_gi:1877221 [Hordeum vulgare][Barley]; contains Pfam
           profile          PF03094: Mlo family
          Length = 583

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 377 FGRRGT*FWIS*RCAFWIVCYTTHFF 454
           FGRR   FW       WIVC+   FF
Sbjct: 218 FGRRHLSFWSKSTITLWIVCFFRQFF 243


>At2g39200.1 68415.m04815 seven transmembrane MLO family protein /
           MLO-like protein 12 (MLO12) identical to SP|O80961
           MLO-like protein 12 (AtMlo12) {Arabidopsis thaliana},
           membrane protein Mlo12 [Arabidopsis thaliana]
           gi|14091594|gb|AAK53805; similar to MLO protein
           SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
           vulgare][Barley]
          Length = 576

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 377 FGRRGT*FWIS*RCAFWIVCYTTHFFGLI 463
           FGRR    W       WI C+   FFG +
Sbjct: 212 FGRRHLNIWSKSTFTLWITCFFRQFFGSV 240


>At1g72090.1 68414.m08333 radical SAM domain-containing protein /
           TRAM domain-containing protein contains Pfam profiles
           PF00919: UPF0004 family protein, PF04055: radical SAM
           domain protein, PF01938: TRAM domain
          Length = 601

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 174 TCPPCLCTSAHTSAARSSNTPNVLGYVSIKQDN 76
           TC  C C++      RS    N+ G +S + DN
Sbjct: 513 TCETCTCSAESCGEERSGEACNISGNISGQDDN 545


>At5g44600.1 68418.m05465 expressed protein 
          Length = 348

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 268 LLYSSRRWRPWYGSYWGKSSLGSIPAVTP 354
           LL  S R + W GSYW      S+P + P
Sbjct: 98  LLLDSTRGQNWTGSYW--DEFASLPPIIP 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,685,900
Number of Sequences: 28952
Number of extensions: 209431
Number of successful extensions: 484
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)