Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N10
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    30   0.29 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    28   0.90 
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    28   1.2  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    27   2.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   2.7  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    26   4.8  
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...    26   4.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.8  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   6.3  
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    25   6.3  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    25   6.3  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    25   6.3  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   6.3  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   6.3  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   8.4  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    25   8.4  

>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +2

Query: 212 IKTILQDFHTRSLHRCLQQNSSILSSGLNFSQKQEPNTLFLPASIMKVSHCSHRNAR 382
           +KTI  D  TR     L      L S +  ++ ++P+T +L   I   +  +HRNAR
Sbjct: 419 VKTISFDPLTRHFAHRLSAELGNLMSQILAAKDRDPSTSYLKTVIFPTNEQTHRNAR 475


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 73   RKLPEWYDRAKIGIFLHWGVYSVPSYG-SEWFW 168
            R L +++  + IG++L W  YS P  G + W W
Sbjct: 2275 RWLQQFWATSNIGLYLPWAGYSGPYLGRTLWLW 2307


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -1

Query: 196 TSENHLSNYSKTILTHNWERNTHPSVKIFLF*LCRTIPVIFVCPNLSSPD*IF 38
           +   HLS+  K+  +   ER + PS+ +    L  TI  +++ P L SPD  F
Sbjct: 25  SGNRHLSSNKKSATSALEERASRPSILVTFLVLAGTILSLYIWPIL-SPDLFF 76


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 206 LWIKTILQDFHTRSLHRCLQQNSSILSS 289
           LWIK++ Q++ +++L   L ++ + LSS
Sbjct: 475 LWIKSLRQEYESKNLLELLDKHQTALSS 502


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
 Frame = +2

Query: 212  IKTILQDFHTRSLHRCLQQNSSILS---SG---LNFSQKQEP---NTLFLPASIMKVSHC 364
            I TIL+  ++R   R LQQ S + S   SG   LNF Q  +P   N       + K+   
Sbjct: 1712 INTILRRNNSRGRRRMLQQMSPLKSNKFSGTNDLNFQQATKPDGSNKSSYMERLEKLKQN 1771

Query: 365  SHRNARSVG 391
            S R+ +SVG
Sbjct: 1772 SERHLQSVG 1780


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 232 ILEDSFYP*TMCTSENHLSNYSKTILTHNWERNTHPSVK 116
           I++ + Y  T+ ++EN+  NYS   L+ +    + PS+K
Sbjct: 498 IIKPNTYKNTILSNENNTPNYSNVCLSTSLINRSLPSLK 536


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 143 PVMGQNGFGVIGKVVL*STHCLWIKTI 223
           P +G NGFG IG++VL   + L  KTI
Sbjct: 4   PKVGINGFGRIGRIVL--RNALVAKTI 28


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 237  IPGVCTDVYSRI--LRSSAVGSTFLKSRSQIHCSYQQAS 347
            +P VC +  ++I  L +  +   FLK R Q  C Y+  S
Sbjct: 2827 LPEVCINQLTKIYTLPNIEIQEAFLKLREQAECHYESPS 2865


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 268  EFFDPQQWAQLFSKAGAK 321
            EFFDP++ +  FS AGAK
Sbjct: 1175 EFFDPEEPSPEFSFAGAK 1192


>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 19/78 (24%), Positives = 32/78 (41%)
 Frame = +1

Query: 220 YPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPSKRSFSWNAV 399
           +P   S  + A   +    DP+  A L  K+G    +L   H +GF    +  +      
Sbjct: 79  FPTAVSPNDMAAHLSPLKSDPE--ANLALKSGDVVKILLGAHIDGFASLVATTTVVSEEP 136

Query: 400 EVGPKHDLVKDLSEAVRA 453
             GP  D++   S A++A
Sbjct: 137 VTGPAADVIAAASAALKA 154


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 143 PVMGQNGFGVIGKVVL 190
           P +G NGFG IG++VL
Sbjct: 4   PKVGINGFGRIGRIVL 19


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 91  YDRAKIGIFLHWGVYSVPSYGSEWFWSN 174
           Y R+ +    +W VYS     S W +SN
Sbjct: 339 YSRSSLPSAENWNVYSKKDIPSRWHYSN 366


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 497 NHSYSE**TPNFMPSARTASDKSFTRSCLGPTSTAFQLNE 378
           + S SE  T N     RT +  +   S  GPT+T+F  NE
Sbjct: 128 HQSDSEKSTSNHSTPERTFASDAKNHSPKGPTTTSFSRNE 167


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 436 SEAVRAEGMKFGVYHSLYEWFNPIYLTDKSN 528
           S AV+    + G  +SL EW NP+ L + SN
Sbjct: 119 STAVQVLAKELG--YSLIEWLNPMNLKEPSN 147


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 4    NSISEHDEVNSKKFNPDWKDLDTRK 78
            N +++H+ + SK    + K +DTRK
Sbjct: 1327 NKVADHESIRSKLSEVEMKLVDTRK 1351


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 326 LFLPASIMKVSHCSHRNARSVGTLLKLVPNTIS*KTCPKL 445
           LFL  +++    C H N  S  T   +V + ++ K  PKL
Sbjct: 272 LFLHVALLVAFTCKHWNKLSRATPFAMVNSMLTLKPLPKL 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,232
Number of Sequences: 5004
Number of extensions: 62096
Number of successful extensions: 180
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)