Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_N10
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_05_0009 - 20048736-20049423,20049504-20049743,20049832-20050385 61 8e-10
04_04_0784 - 28044883-28045654,28046626-28046859,28047328-28047875 60 1e-09
12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730 28 6.5
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 28 6.5
03_04_0205 - 18485933-18488446 28 6.5
11_04_0131 + 13792531-13792632,13795943-13796110 27 8.6
07_03_1126 - 24166758-24166879,24166948-24167386,24167708-241678... 27 8.6
05_04_0085 + 17790417-17790714,17791826-17791869,17793658-177937... 27 8.6
02_05_0746 - 31451303-31453168,31453243-31453357,31454296-314543... 27 8.6
>09_05_0009 - 20048736-20049423,20049504-20049743,20049832-20050385
Length = 493
Score = 60.9 bits (141), Expect = 8e-10
Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Frame = +1
Query: 259 FTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPSKRSFSWNAVEVGP----KHDLV 426
F D QW + AGA +VL +KHH+GF L+PS + + ++V P + D+V
Sbjct: 80 FRPAALDASQWMDAAAAAGASLVVLVAKHHDGFCLWPS--AHTAHSVRASPWRGGRGDVV 137
Query: 427 KDLSEAVRAEGMKFGVYHSLYEWFNPIYLTDKS-NNFYNAQL 549
++ ++A RA G+ G+Y S ++ + Y + + N +Y AQL
Sbjct: 138 REFADAARARGLDIGIYLSPWDRHDKRYGREVAYNEYYLAQL 179
>04_04_0784 - 28044883-28045654,28046626-28046859,28047328-28047875
Length = 517
Score = 60.1 bits (139), Expect = 1e-09
Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 3/109 (2%)
Frame = +1
Query: 256 MFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPSK-RSFSWNAVE-VGPKHDLVK 429
+F D QWA+ + G +VLT+KHH+GF L+PS ++S A G D+V
Sbjct: 77 VFAPSALDAGQWARAAAAGGFGRVVLTAKHHDGFCLWPSALTNYSVAASPWKGGAGDVVG 136
Query: 430 DLSEAVRAEGMKFGVYHSLYEWFNPIY-LTDKSNNFYNAQLRRY*TMGG 573
+L+ A RAEG+ G+Y S ++ P+Y T N Y Q+ T G
Sbjct: 137 ELAAAARAEGIGLGLYLSPWDRHEPVYGDTVAYNEHYLGQMTELLTRYG 185
>12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730
Length = 802
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 253 PMFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFP---SKRSFSW 390
P+FT + +DP W L +KA +V EG +FP + R FS+
Sbjct: 99 PIFTFDMYDPVNWDNLDNKA-RDILVEKGPIREGNIVFPLDVNTRHFSY 146
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -2
Query: 480 VIDAEFHAFSAYSFGQVFYEIV--FGTNFNSV 391
+IDAE +FSA SF +V FG +FNSV
Sbjct: 2422 IIDAEIKSFSAVSFDDYGGMMVPLFGISFNSV 2453
>03_04_0205 - 18485933-18488446
Length = 837
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 249 CTDV-YSRILRSSAVGSTFLKSRSQIHCSYQQAS*RFHTVPIETLV 383
CT V YS +LR+ A + ++ QIHCS ++++ TV +L+
Sbjct: 463 CTQVTYSSVLRACA-STASIRHAGQIHCSIEKSTFNNDTVIGNSLI 507
>11_04_0131 + 13792531-13792632,13795943-13796110
Length = 89
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = -1
Query: 484 ASDRRRISCLQRVQLRTSLLRDRVWDQLQQRSN*TSVSMGTV 359
ASD R++C+ ++T LL D V ++ + S+ + + +G V
Sbjct: 13 ASDGVRVNCVAPGYIKTPLLADYVASEIFEESDYSRIPLGRV 54
>07_03_1126 -
24166758-24166879,24166948-24167386,24167708-24167875,
24168388-24168675,24169468-24169575,24169759-24169811,
24170033-24170192,24170353-24170442,24170902-24170953,
24171156-24171283
Length = 535
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 230 DFHTRSL---HRCLQQNSSILSSGLNFSQKQEPNTLFLPASIM 349
+F T++L H L NSS L L +S+ PN +FLP + +
Sbjct: 146 NFITKALLVQHEKLVLNSSQLQELLEYSKSVPPNPVFLPCAFV 188
>05_04_0085 +
17790417-17790714,17791826-17791869,17793658-17793793,
17794315-17794391,17794646-17794706,17794707-17794924,
17795168-17795412,17796032-17796401,17796916-17797344
Length = 625
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 82 PEWYDRAKIGIFLHWGVYSVPSYGS 156
PEW +RA+ + H+G + P Y S
Sbjct: 453 PEWQERAREEVLHHFGRTTTPDYDS 477
>02_05_0746 -
31451303-31453168,31453243-31453357,31454296-31454351,
31455057-31455138,31455484-31455517,31455912-31456016,
31456108-31456387
Length = 845
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 297 LSPLLRIEEFCCKHRCK 247
+ PL+R EE C K RCK
Sbjct: 159 IGPLIRYEECCAKMRCK 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,875,410
Number of Sequences: 37544
Number of extensions: 367949
Number of successful extensions: 969
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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