Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N10
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7747| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)               250   6e-67
SB_31446| Best HMM Match : No HMM Matches (HMM E-Value=.)             249   1e-66
SB_55050| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.4e-18)        234   3e-62
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)                223   6e-59
SB_20513| Best HMM Match : No HMM Matches (HMM E-Value=.)             192   2e-49
SB_729| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-11)          185   3e-47
SB_31239| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.7e-16)        163   7e-41
SB_33577| Best HMM Match : Alpha_L_fucos (HMM E-Value=0.043)           44   9e-05
SB_53927| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.8)              30   1.6  
SB_39519| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.4)              30   1.6  
SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)                   29   3.8  
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)                    28   6.6  
SB_50202| Best HMM Match : HC2 (HMM E-Value=0.41)                      27   8.7  
SB_56597| Best HMM Match : COesterase (HMM E-Value=0)                  27   8.7  

>SB_7747| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
          Length = 413

 Score =  250 bits (612), Expect = 6e-67
 Identities = 105/168 (62%), Positives = 134/168 (79%), Gaps = 3/168 (1%)
 Frame = +1

Query: 40  KFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYG--SEWFWSNWKGGSLKYTLFMD 213
           K+ P+W  LDTR LP+WYDRAK GI +HWGVYSVPS+G  +EWFW+ WK GS +Y  FM 
Sbjct: 24  KYQPNWDSLDTRPLPDWYDRAKFGIIMHWGVYSVPSFGVAAEWFWNYWKSGSPQYVDFMK 83

Query: 214 KNYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPSKRSFSWN 393
           +NYPPGFSY +FAPMF AEFFDP  WA L S +GAKY V+TSKHHEG+T + S  S++WN
Sbjct: 84  QNYPPGFSYADFAPMFKAEFFDPDIWASLISMSGAKYFVITSKHHEGWTNWRSNVSWNWN 143

Query: 394 AVEVGPKHDLVKDLSEAVRAEG-MKFGVYHSLYEWFNPIYLTDKSNNF 534
           +V+ GP  DL+ DL++++RA G +KFG+Y S +EWFNPIYLTD++NN+
Sbjct: 144 SVDNGPHRDLIGDLADSIRASGDVKFGLYFSHFEWFNPIYLTDQANNY 191


>SB_31446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score =  249 bits (609), Expect = 1e-66
 Identities = 102/166 (61%), Positives = 132/166 (79%), Gaps = 1/166 (0%)
 Frame = +1

Query: 40  KFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFWSNWKG-GSLKYTLFMDK 216
           ++N  WK LD R LP WYD+AK GIF+HWGV+SVP +GSEWFW  WKG    +Y  FM K
Sbjct: 10  EYNATWKSLDARPLPAWYDQAKFGIFVHWGVFSVPGFGSEWFWYFWKGLHRPEYVEFMKK 69

Query: 217 NYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPSKRSFSWNA 396
           NY PGFSY +F PMF AEF+DP+QWA LF+K+GA+Y+VLTSKHHEG+T++ S  S++WNA
Sbjct: 70  NYRPGFSYPDFGPMFKAEFYDPEQWADLFAKSGARYVVLTSKHHEGWTMWKSNVSWNWNA 129

Query: 397 VEVGPKHDLVKDLSEAVRAEGMKFGVYHSLYEWFNPIYLTDKSNNF 534
           V+ GP  DLV DL++AVR   ++FG+YHSLYEWFNP++L D+ +N+
Sbjct: 130 VDNGPHRDLVGDLAKAVRKTEVRFGLYHSLYEWFNPLFLKDRESNY 175


>SB_55050| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.4e-18)
          Length = 203

 Score =  234 bits (573), Expect = 3e-62
 Identities = 101/175 (57%), Positives = 132/175 (75%), Gaps = 8/175 (4%)
 Frame = +1

Query: 34  SKKFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSE-------WFWSNWKGGSL 192
           + K+ P W  LD+R  P WYD+AK GIF+HWGVYSVPS+G+E       WFW  W  G+ 
Sbjct: 22  TSKYLPTWDSLDSRPNPPWYDKAKFGIFMHWGVYSVPSFGAESGGTAGEWFWRYWHDGNP 81

Query: 193 KYTLFMDKNYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPS 372
            +  FM KNYPPGFSY +FAPMF AEFFDP ++A L +K+GAKY VLTSKHHEG+T + S
Sbjct: 82  AFVNFMKKNYPPGFSYADFAPMFKAEFFDPDEFADLVAKSGAKYFVLTSKHHEGWTNWRS 141

Query: 373 KRSFSWNAVEVGPKHDLVKDLSEAVRAEG-MKFGVYHSLYEWFNPIYLTDKSNNF 534
             S++WN+V+ GP  DL+ DL++++RA G +KFG+Y S +EWFNPIYLTD++NN+
Sbjct: 142 NVSWNWNSVDNGPHRDLIGDLADSIRASGDVKFGLYFSHFEWFNPIYLTDQANNY 196


>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
          Length = 1127

 Score =  223 bits (546), Expect = 6e-59
 Identities = 93/167 (55%), Positives = 125/167 (74%), Gaps = 2/167 (1%)
 Frame = +1

Query: 40  KFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFWSNWKGGSLKYTL-FMDK 216
           K+ P W  LD+R  P WYD+AK G+F+HWGVYSVPS+GSEWFW++WK       + FM K
Sbjct: 22  KYLPSWDSLDSRPDPPWYDKAKFGVFMHWGVYSVPSFGSEWFWNHWKQQHYPSCIEFMKK 81

Query: 217 NYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPSKRSFSWNA 396
           NYP GFSY +F PMF AEFFDP  +A+L +K+GA+Y VLTSKHHEG+T + S  S++WN+
Sbjct: 82  NYPSGFSYADFGPMFKAEFFDPNYFAKLVAKSGARYFVLTSKHHEGWTNWKSNTSWNWNS 141

Query: 397 VEVGPKHDLVKDLSEAVRA-EGMKFGVYHSLYEWFNPIYLTDKSNNF 534
           V+ GP  DL  D++ A+R  + + FG+Y+SLYEWF+P+YL D+ N +
Sbjct: 142 VDNGPHRDLTDDMATAIRQYKNITFGLYYSLYEWFHPLYLEDQHNKY 188


>SB_20513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score =  192 bits (467), Expect = 2e-49
 Identities = 77/131 (58%), Positives = 97/131 (74%)
 Frame = +1

Query: 34  SKKFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFWSNWKGGSLKYTLFMD 213
           S  +NP W  LD R +P WYD+AK GIF+HWGV+SVPS+GSEWFW  W      Y  F++
Sbjct: 35  STHYNPTWNSLDKRPIPAWYDKAKFGIFMHWGVFSVPSFGSEWFWKFWHDKDKPYVDFVN 94

Query: 214 KNYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPSKRSFSWN 393
            NYPP +SY +FAP  TAEFFD  +WA L SK+GAKY V TSKHHEG+T +PSK++++WN
Sbjct: 95  NNYPPRWSYADFAPQLTAEFFDANEWADLLSKSGAKYFVFTSKHHEGWTNWPSKQAWNWN 154

Query: 394 AVEVGPKHDLV 426
           +VE GP  D+V
Sbjct: 155 SVENGPHRDIV 165


>SB_729| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-11)
          Length = 155

 Score =  185 bits (450), Expect = 3e-47
 Identities = 79/133 (59%), Positives = 98/133 (73%), Gaps = 4/133 (3%)
 Frame = +1

Query: 40  KFNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYG----SEWFWSNWKGGSLKYTLF 207
           K+ P W+ LD+R  P WYD+AK GIF+HWG+YSVPSYG    SEWFW  W  GS     F
Sbjct: 22  KYLPTWESLDSRPNPGWYDKAKFGIFMHWGLYSVPSYGDGEASEWFWKYWHDGSSANVNF 81

Query: 208 MDKNYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPSKRSFS 387
           M KN+PPGF+Y +F PMF AEFFDP  +A L +K+GAKY VLTSKHHEG+T++ S  S++
Sbjct: 82  MKKNFPPGFTYADFGPMFKAEFFDPDVFANLIAKSGAKYFVLTSKHHEGWTMWKSNVSWN 141

Query: 388 WNAVEVGPKHDLV 426
           WN+V+ GP  DLV
Sbjct: 142 WNSVDNGPHRDLV 154


>SB_31239| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.7e-16)
          Length = 476

 Score =  163 bits (397), Expect = 7e-41
 Identities = 67/145 (46%), Positives = 93/145 (64%)
 Frame = +1

Query: 49  PDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFWSNWKGGSLKYTLFMDKNYPP 228
           PDW+ LD R LP WY+ AK GIF+HWG+YSVP  GSEWFW +W+ G  +   +M +NYPP
Sbjct: 131 PDWESLDARPLPSWYEDAKFGIFVHWGLYSVPGVGSEWFWYHWRQGYPEIMEYMWRNYPP 190

Query: 229 GFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPSKRSFSWNAVEVG 408
           GFSY +FA    AE F+   W +L +K+GA+Y V T KHH+GF  + +  S++WN+V+ G
Sbjct: 191 GFSYADFASKLKAEMFNATAWHELIAKSGARYFVFTGKHHDGFVNWNTSYSWNWNSVDNG 250

Query: 409 PKHDLVKDLSEAVRAEGMKFGVYHS 483
           P  D+          E M   V+++
Sbjct: 251 PHRDITPMKVVYALEESMSIRVWYT 275


>SB_33577| Best HMM Match : Alpha_L_fucos (HMM E-Value=0.043)
          Length = 538

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
 Frame = +1

Query: 205 FMDKNYPPGFSYQEFAP--MFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPSKR 378
           F  + +    S  + AP   F        QW       GAK++ LT  H  GF L+PS+ 
Sbjct: 74  FNMQTFNKSMSQGDVAPPDTFNPSELSVDQWVGAAVSFGAKWVTLTLSHFSGFLLWPSE- 132

Query: 379 SFSW---NAVEVGPKHDLVKDLSEAVRAEGMKFGVYHSLY-EWFNPI--YLT---DKSNN 531
           S+ +   N    G   DL  DL ++ +   ++ G Y S++  WF  +  Y      + + 
Sbjct: 133 SYKYTVRNTKWRGGNGDLAWDLIQSCKKHNIEHGFYLSVHNNWFMDVNNYRVRNDSEKSA 192

Query: 532 FYNAQLRRY*TMGGCET 582
           F+NA L ++  + G E+
Sbjct: 193 FFNASLAQFQEIFGPES 209


>SB_53927| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.8)
          Length = 582

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -2

Query: 474 DAEFHAFSAYSFGQVFY-EIVFGTNFNSVPTERAFRWEQCETFMMLAGKNNVFGSCF*EK 298
           DA+   FS Y +GQ  Y +  F  NF       A   ++ + F +LA  +N FG    + 
Sbjct: 197 DADMSPFSVYGYGQSLYNDESFRDNFEDGLRFFAEECDRLQGFQILADVHNGFGGLMSQC 256

Query: 297 LSPL 286
           L  L
Sbjct: 257 LEDL 260


>SB_39519| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.4)
          Length = 582

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -2

Query: 474 DAEFHAFSAYSFGQVFY-EIVFGTNFNSVPTERAFRWEQCETFMMLAGKNNVFGSCF*EK 298
           DA+   FS Y +GQ  Y +  F  NF       A   ++ + F +LA  +N FG    + 
Sbjct: 197 DADMSPFSVYGYGQSLYNDESFRDNFEDGLRFFAEECDRLQGFQILADVHNGFGGLMSQC 256

Query: 297 LSPL 286
           L  L
Sbjct: 257 LEDL 260


>SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)
          Length = 1655

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 313 GAKYIVLTSKHHEGFTLFPS 372
           G+K +VLT+ HH   T FPS
Sbjct: 805 GSKSLVLTASHHHTITTFPS 824


>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
          Length = 1338

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 241 QEFAPMFTAEFFDPQQWAQLFSKAGAKYIVLTSKHH 348
           QEF  M   E  + QQW  L+SK G   +  ++ HH
Sbjct: 198 QEFGGM--EEVTNQQQWRNLYSKMGIAIMPPSASHH 231


>SB_50202| Best HMM Match : HC2 (HMM E-Value=0.41)
          Length = 545

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 340 CW*EQCIWLLLLRKVEPTAEDRRILL*TSVQTPGMK 233
           CW   C +    R+++ T E RRILL   +  PG++
Sbjct: 22  CWSACCTY----RQIDETGESRRILLTVKLMRPGIE 53


>SB_56597| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 505

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 271 FFDP-QQWAQLFSKAGAKYIVLTSKHHEGFTLFPSKRSFSWNAVEVGPK 414
           FF P  + A   +KAG    +    H   F++FP +    W A+E  P+
Sbjct: 346 FFAPVTRTANSLAKAGISTYMYLFTHRSTFSMFPPETVRVWVAMETEPQ 394


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,794,335
Number of Sequences: 59808
Number of extensions: 422854
Number of successful extensions: 977
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)