Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N10
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical pr...   203   7e-53
U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw (imit...    30   1.1  
AF003151-6|AAK18909.1|  314|Caenorhabditis elegans Collagen prot...    30   1.1  
AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical ...    30   1.4  
AC006678-4|AAK68391.1|  197|Caenorhabditis elegans Hypothetical ...    29   3.3  
X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic int...    27   7.7  
U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate fi...    27   7.7  

>Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical
           protein W03G11.3 protein.
          Length = 482

 Score =  203 bits (496), Expect = 7e-53
 Identities = 85/173 (49%), Positives = 121/173 (69%), Gaps = 4/173 (2%)
 Frame = +1

Query: 43  FNPDWKDLDTRKLPEWYDRAKIGIFLHWGVYSVPSYGSEWFWSNWKGGSLKYTL--FMDK 216
           + PDW+ LD R LP WYD +K GIF HWG+YSVP++ SEW W  WKG      +  F+DK
Sbjct: 18  YTPDWESLDNRPLPSWYDDSKFGIFCHWGLYSVPAFRSEWMWWYWKGTQPDKDVVNFVDK 77

Query: 217 NYPPGFSYQEFAPMFTAEFFDPQQWAQLFSKAGAKYIVLTSKHHEGFTLFPSKRSFSWNA 396
           NY PG +Y +FA  FTAE+F+  Q+A+    +GA+Y V TSKHHEGFT++PS+ S++WN+
Sbjct: 78  NYKPGTTYADFAKDFTAEYFNANQFAETVKTSGARYFVFTSKHHEGFTMWPSRTSWNWNS 137

Query: 397 VEVGPKHDLVKDLSEAVRAEGMKFGVYHSLYEWFNPIYLTDKSNN--FYNAQL 549
           +++GPK D+V +L +A +   + FG+Y S +EWF+P++L D   N  FY  Q+
Sbjct: 138 MDIGPKRDIVGELRDAFKKTDVHFGLYFSQFEWFHPMFLDDGKFNTTFYPEQV 190


>U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw (imitation
            swi) homologprotein 1 protein.
          Length = 1009

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = -2

Query: 489  VQRVIDAEFHAFSAYSFGQVFYEIVFGTNFNSVPTERAFRWEQCETFMMLAGKNNVF 319
            V++ +DA+   + A  F Q+   I +GTN     TE   R+  CET  +   K NVF
Sbjct: 873  VKKALDAKIAKYKA-PFQQL--RISYGTNKGKTYTEEEDRFLVCETHRLGHDKENVF 926


>AF003151-6|AAK18909.1|  314|Caenorhabditis elegans Collagen protein
           52 protein.
          Length = 314

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +1

Query: 238 YQEFAPMFTAEFFDPQQWAQLFSKAGAKYIVLTSKHH--EGFTLFPSKRSFSWNAVEVGP 411
           ++ FA  +  + +DP  + Q    A     VL S+HH  +           S N V+V  
Sbjct: 30  FRRFATSYRTQQYDPTLYVQKMVPADTYQSVLASEHHLPDAVAAVDGSSLGSINGVDVRK 89

Query: 412 KHDLVK 429
           K  LVK
Sbjct: 90  KEKLVK 95


>AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical
           protein Y40D12A.2 protein.
          Length = 512

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 109 GIFLHWGVYSVPSYGSEWFWSNWKGGSLKYTLFMDKNYPPGFSY 240
           G+F+  G + V +YG E   + W    +   +++D     GFSY
Sbjct: 80  GLFIEMGPFRVRNYGEEVNRNPWTWNRIANIIYLDAPAGVGFSY 123


>AC006678-4|AAK68391.1|  197|Caenorhabditis elegans Hypothetical
           protein R05G9.1 protein.
          Length = 197

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = +1

Query: 289 WAQLFSKAGAKYIVLTSKHHEGFTLFPSKRSFSWNAVEVG 408
           W Q F K G  Y V   KHH       +    SW  ++ G
Sbjct: 48  WRQTFGKCGDDYSVEAPKHHGSSLTTTTTDRLSWEFLDHG 87


>X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 209 WIKTILQDFHTRSLHRCLQQN 271
           W K  +Q+ HT++   CL+QN
Sbjct: 302 WYKLKVQEIHTQNSRNCLEQN 322


>U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate
           filament, a protein 4 protein.
          Length = 558

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 209 WIKTILQDFHTRSLHRCLQQN 271
           W K  +Q+ HT++   CL+QN
Sbjct: 285 WYKLKVQEIHTQNSRNCLEQN 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,902,315
Number of Sequences: 27780
Number of extensions: 336983
Number of successful extensions: 909
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)