Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_N09
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 63 3e-11
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 40 3e-04
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 31 0.15
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 29 0.59
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 28 1.0
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 27 1.8
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 27 1.8
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 26 3.2
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 26 4.2
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 25 7.3
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 7.3
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 25 9.6
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 9.6
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 25 9.6
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 25 9.6
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 9.6
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 62.9 bits (146), Expect = 3e-11
Identities = 47/138 (34%), Positives = 61/138 (44%), Gaps = 16/138 (11%)
Frame = +2
Query: 5 GHIEVWDT-RGYKKLGACSAPDTTCLQWDPRGETFFTATTYPRLTVGNGYKIWHYTGVLM 181
G I+++D KK+ A + T ++ P + TA T PRL V N KIWH TG M
Sbjct: 334 GSIDIFDAANNMKKITTVEAANCTYCEFSPDSQFLLTAVTSPRLRVDNSIKIWHITGAPM 393
Query: 182 HKRVCQEKENLLGINWQPG--NYPKSELSRTSPKGIEDATP-------------KPAGAY 316
+E L W+P N + + TS TP KPAGAY
Sbjct: 394 ---FYEEFNELYQAFWRPRPLNPTLLQNALTSASLPSPPTPHASASKLAAKPSVKPAGAY 450
Query: 317 RPPGARNKPSNFTLHEHE 370
RPPGAR + S F+ E
Sbjct: 451 RPPGARGQNSTFSYRREE 468
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 39.5 bits (88), Expect = 3e-04
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = +2
Query: 38 KKLGACSAPDTTCLQWDPRGETFFTATTYPRLTVGNGYKIWHYTGVLMHKRVCQEKENLL 217
+++G+ T L+WDP G T++T R + NGY++ + G L+ + + E + +
Sbjct: 562 QQIGSAEHFGMTELEWDPSGRYVTTSSTIWRHKLENGYRLCDFRGTLLREEMIGEFKQFI 621
Query: 218 GINWQPGNYPKSELSRTSPKGI 283
W+P P S L++ K I
Sbjct: 622 ---WRP--RPPSPLTKEDMKKI 638
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 30.7 bits (66), Expect = 0.15
Identities = 16/72 (22%), Positives = 28/72 (38%)
Frame = +2
Query: 194 CQEKENLLGINWQPGNYPKSELSRTSPKGIEDATPKPAGAYRPPGARNKPSNFTLHEHEK 373
C + ++ ++ +P P + P +TP R P + + S ++
Sbjct: 435 CVQLPSIRSLSLRPSQVPLIPPLKCDPNAFSASTPASGAVSRTPSSVSLSSLSNVNS-SM 493
Query: 374 PHKPGESPNVAP 409
PHKP NV P
Sbjct: 494 PHKPASQSNVGP 505
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 28.7 bits (61), Expect = 0.59
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 135 VSLG*VVAVKNVSPRGSHCKQVVS 64
+ L VVA+K++S GSHCK ++
Sbjct: 1121 IELPGVVAMKSISDHGSHCKSYIN 1144
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +2
Query: 218 GINWQPGNYPKSELSRTSPKGIEDATPKPAGAYRPPGARNKPSNFTLHEHEKPHKPGESP 397
G+N N P++ L RT + + +PA PP + ++ + +P +SP
Sbjct: 340 GVNASTYNPPRAPLQRTPSGSLTPLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSKSP 399
Query: 398 NVA 406
+V+
Sbjct: 400 SVS 402
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 210 IFWELIGNRVITRRVNYREHHRKGSR 287
+ ++++GNR + +RVN R H K S+
Sbjct: 75 LIYKVVGNRYMEKRVNVRIEHVKHSK 100
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 210 IFWELIGNRVITRRVNYREHHRKGSR 287
+ ++++GNR + +RVN R H K S+
Sbjct: 75 LIYKVVGNRYMEKRVNVRIEHVKHSK 100
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 26.2 bits (55), Expect = 3.2
Identities = 18/79 (22%), Positives = 34/79 (43%)
Frame = +2
Query: 173 VLMHKRVCQEKENLLGINWQPGNYPKSELSRTSPKGIEDATPKPAGAYRPPGARNKPSNF 352
++ +K+ N+ N ++P ++ KG ++ K P +RNK +
Sbjct: 73 IMKNKKNVTPNNNIRQKNTATSSHPSFYIANNKQKGYDEEMYKVN-----PASRNKSQSN 127
Query: 353 TLHEHEKPHKPGESPNVAP 409
+ HEK K + NV+P
Sbjct: 128 NISSHEKSSK--TTKNVSP 144
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +2
Query: 245 PKSELSRTSPKGIEDATPKPAGAYRPPGARNKPSNFTLHEHEKPHKPGESPNVAPSK 415
PK + K ++ TP + PP + K S T++EH P +P+ K
Sbjct: 231 PKQSTGENTKKAVKLETPLTSTPPIPPLSEPKHSPATVNEHISPPSALTNPSTEELK 287
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 254 ELSRTSPKGIEDATPKPAGAYRPPGARNK 340
+ ++ + +E+ P RPPGARNK
Sbjct: 312 QTNQVETENVENEAGVPRKRGRPPGARNK 340
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 264 EHHRKGSRTLHRNPRGRTDLQARGTNRRTLPCTN 365
EHH++ +R ++ D + + RR +PC+N
Sbjct: 327 EHHQQDTRFVNDPNSTSHDRRQKRPTRRHIPCSN 360
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 24.6 bits (51), Expect = 9.6
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Frame = +2
Query: 119 TYPRLTVGNGYKIWH--------YTGVLMHKRVCQEKENLLGINWQPGNYPKSELSRTSP 274
T+ + VG + ++H Y + R+ ++ N ++ P PK +S
Sbjct: 655 TFGKARVGTQWNVFHSEKICDISYANIQGKDRLIEKFRNSCVMDENPAYRPKIFVSHGPN 714
Query: 275 KGIEDATPKPAGAYR 319
+G+E+ P P A R
Sbjct: 715 RGMEEPFPAPNNARR 729
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 535 NECLFLCARLHGLRGHVAVGF 473
N + LCA LH L+ H+ F
Sbjct: 712 NHLIILCASLHSLKAHLPTIF 732
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 56 SAPDTTCLQWDPRGETFFTATT 121
S P+ L W P G+T F+ T
Sbjct: 282 SEPECISLTWSPDGQTLFSGWT 303
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 9.6
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +2
Query: 251 SELSRTSPKGIEDATPKPAGAYRPPGARNKPSNFTLHEHEKPHKPGESPNVAPSK 415
S L+ +S + +ATP PA + R PS+ T P + E V K
Sbjct: 555 SPLATSSSEHEMEATPSPALLKKTNKRRELPSSLTKKNTRTPQRSKEVKKVPARK 609
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 120 VVAVKNVSPRGSHCKQVVSGAEHAPSF 40
V+ V PR S+C Q ++ H SF
Sbjct: 20 VIIHGRVGPRASYCPQTINVKHHENSF 46
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,563
Number of Sequences: 5004
Number of extensions: 50608
Number of successful extensions: 180
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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