Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N08
         (388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    28   0.44 
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   4.1  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   4.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   4.1  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   5.5  
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    25   5.5  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    25   5.5  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    24   7.2  
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc...    24   9.6  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    24   9.6  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    24   9.6  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    24   9.6  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    24   9.6  

>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 28.3 bits (60), Expect = 0.44
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 174 DEVNPISGLTRREIYAVQKSWAPVFANSIPNGAELLRRLLSNIFRRTQEFLQ 329
           DE +P S  T     A Q+SW  + A S+P    L +++L+ I +R   FLQ
Sbjct: 214 DEPSPSSTETSSIKRAFQESW--LSALSLPLSVNLYKQVLNVIHKRVIPFLQ 263


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 253 FANTGAHDF*TAYISLLVSPDIGFTSSGSPPHQNWLIQLPIV 128
           +ANT      +    L+  PD+G+ +  SPP     I+ P V
Sbjct: 459 YANTVGFPIPSIEFKLVDIPDLGYYTDSSPPRGEVWIRGPAV 500


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
 Frame = -2

Query: 273 PHRWVLSSQILVPTISER--------RIFLFSSVRILDSLHPD 169
           P     S   LVP +SER        R+FL S +R+LDS+ PD
Sbjct: 195 PRMHTFSLSELVPLLSERLYVINPNTRMFLVSWIRLLDSI-PD 236


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 285  VLKAPHRWVLSSQILVPTISERRIFLFSSV 196
            +L+    W+++S + VPT+ E+   L   V
Sbjct: 2208 LLEIVRGWIMNSPVPVPTVKEKAALLLKMV 2237


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
 Frame = +3

Query: 174 DEVNPISGLTRREIYAVQKSWAPVFANS------IPNGAELLRRLLSNIFRRTQEFLQ 329
           D++ P S      ++  +    P F  S      IPN  + +   LSN+F R   +L+
Sbjct: 148 DDIEPTSPREASPVFNGRPPIPPEFLKSRHKEFTIPNPLQFISNFLSNLFSRDTRYLK 205


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 298 FDNNRLKSSAPLGIEFANTGAH 233
           F   + +S   L +EF NTGAH
Sbjct: 73  FKGTKNRSQKALELEFENTGAH 94


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 286 DCCQTFSAEHKN 321
           DCC  FS +H+N
Sbjct: 420 DCCSNFSTDHEN 431


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = -2

Query: 321 ILVFCGKCLTTIVLKAPHRWVLSSQILVPTISERRIFLFSSVRILDSLHPDHRPTRT 151
           ILVF    + T +   P  W  S   LVP  ++  I L      +  L  DH P  T
Sbjct: 307 ILVFLYSLINTTLRLRPDSWKASYSTLVP-YNDSSIALSKLTSQILLLFLDHTPHET 362


>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 137 AHCYLLSSFNSLQNNDRGQ*NKYGRQVNK 51
           AH YL+SS  S   NDR   +KYG    K
Sbjct: 210 AHGYLISSTVSPATNDRN--DKYGGTFEK 236


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -2

Query: 264 WVLSSQILVPTISERRIFLFSSVRILDSLHPDHRPTRTGLSSC 136
           W + S I   TI ER+ FL  S   ++     H P   G   C
Sbjct: 88  WCVCSNIRELTIYERKGFLKQSPEAVEKAIYSHLPFYLGGDKC 130


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 223 TAYISLLVSPDIGFTSSGSPPHQNWLIQLPIVIFCPVLTLFKTTI 89
           +AY+  +V P  G T+S      N L     VI C V  +F  T+
Sbjct: 587 SAYLMSIVIPFTGVTASSRRETVNILSSSISVIECAVNDVFYATV 631


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 132 MGNWISQFWWGGDPDEVNPISGLTRREIYAVQKS 233
           MG++  Q +W GDP   + I  L   E + +  S
Sbjct: 507 MGSYAIQIFWRGDPQHESFILKLRNEESHKLWMS 540


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 42  ILIFIYLSSVFILLTAIVVLKRVKTGQKITMGNWISQFWWGGDP 173
           I++ I+L+ V  +L    ++  V     +   NWISQ    G P
Sbjct: 403 IILEIFLNGVVSVLACSRLVFAVSRDGVLPFSNWISQVSKTGQP 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,710,943
Number of Sequences: 5004
Number of extensions: 34752
Number of successful extensions: 97
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)