Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N08
         (388 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0988 - 7806113-7806193,7806275-7806499,7806589-7806709,780...    34   0.045
01_06_1567 + 38293612-38293795,38294467-38294523,38294609-382946...    29   1.3  
03_06_0754 - 36025579-36027000                                         27   5.2  
06_02_0015 + 10599131-10600248,10601009-10602752                       27   6.9  
04_04_1041 - 30329037-30329102,30329199-30329352,30329606-303297...    27   6.9  
11_06_0146 + 20621730-20621865,20621947-20622026,20622600-206226...    26   9.1  
06_03_0548 + 22004338-22006746                                         26   9.1  

>01_01_0988 -
           7806113-7806193,7806275-7806499,7806589-7806709,
           7807065-7807256,7807884-7807947,7808135-7808261,
           7808338-7808411,7808494-7808598,7808763-7808865,
           7808966-7809028,7809113-7809296,7809788-7809858
          Length = 469

 Score = 33.9 bits (74), Expect = 0.045
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = -2

Query: 360 VFFVRQFADH-LEGILVFCGKCLTTIVLK-APHRWVLSSQILVPTISERRIFLFSSVRIL 187
           V  +  F D  LEG+L+  G CL++++L      W  S  I+  +IS+R     + +RI+
Sbjct: 280 VIVISLFLDRQLEGLLLILGDCLSSLILYFNSSEWESSCLIVAQSISQRVTMDLNCLRIV 339

Query: 186 DSL 178
           D +
Sbjct: 340 DCI 342


>01_06_1567 +
           38293612-38293795,38294467-38294523,38294609-38294699,
           38294799-38294959,38295045-38295172,38295291-38295428,
           38295717-38295809,38298219-38298324,38298393-38298517
          Length = 360

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -2

Query: 333 HLEGIL--VFCGKCLTTIVLKAPHRWVLSSQILVPTISERRIFLFSSVRIL 187
           H+ GIL  V C    TTIVL AP    + S   V  ++    FLF +V +L
Sbjct: 124 HIFGILGCVLCVVGSTTIVLHAPQEREIDSVAEVWALATEPAFLFYAVTVL 174


>03_06_0754 - 36025579-36027000
          Length = 473

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -2

Query: 282 LKAPHRWVLSSQILVPTISERRIFLFSSVRILDSLHPDHRPTRTGLSSCPLLSS 121
           LK    W  +   +V +++     + + ++++     DHRPT T L     LSS
Sbjct: 210 LKQTSLWSSTFDAVVSSLARAAFTILARIKLVFGAAHDHRPTTTPLHRSLTLSS 263


>06_02_0015 + 10599131-10600248,10601009-10602752
          Length = 953

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 12  GTRAPGGSLDILIFIYLSSVFILLTAIVVLKRVKTGQKITMGNWI 146
           G  A G S D+L   Y+S++F L+ A V L  V     +    W+
Sbjct: 110 GAYAAGVSRDVLAVAYVSALFGLVFAYVALHIVVATSALPPVEWL 154


>04_04_1041 -
           30329037-30329102,30329199-30329352,30329606-30329733,
           30329918-30330043,30330545-30330675,30331091-30331304,
           30332056-30332061,30332216-30332246,30332410-30332867,
           30332992-30333136,30333255-30333712,30336945-30337085,
           30337146-30337158,30337611-30337636
          Length = 698

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 99  LKRVKTGQKITMGNWISQFWWGGDPDEV 182
           LKR++  ++I    W +Q WWG + D +
Sbjct: 207 LKRIRFSREI-FNKWEAQRWWGENYDRI 233


>11_06_0146 +
           20621730-20621865,20621947-20622026,20622600-20622686,
           20622789-20622866,20622947-20623038,20623132-20623333,
           20623644-20623734,20624163-20624221,20624413-20624561,
           20624662-20624743,20624828-20625214
          Length = 480

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 99  LKRVKTGQKITMGNWISQFWWGGDPDEVNPISG 197
           LKR +TGQ   MG + +   WG    +  P+SG
Sbjct: 387 LKRHETGQSDQMGPFSNCKVWGTVDPDYGPVSG 419


>06_03_0548 + 22004338-22006746
          Length = 802

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = -3

Query: 383 ALN*GFSMYSSSGSLRIIL-KEFLCSAENV*QQSS*KLRTVGY*--VRKYWCPRFLNGVY 213
           AL  G S+  S+G++ I L +E   S   V +      + V Y   V KY+ P FL+ + 
Sbjct: 386 ALLSGVSLIGSTGTMYIKLPQELKVSDHQVPRSQPFDQKYVKYCTTVDKYFVPDFLDKLK 445

Query: 212 FSSRQSGYWIHF 177
               +S YW  +
Sbjct: 446 SGQNESKYWYFY 457


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,109,893
Number of Sequences: 37544
Number of extensions: 217065
Number of successful extensions: 576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)