Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N08
         (388 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56314| Best HMM Match : DUF454 (HMM E-Value=4.3)                    29   1.8  
SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)           28   3.1  
SB_24100| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         27   5.3  
SB_13944| Best HMM Match : Citrate_synt (HMM E-Value=0)                27   5.3  
SB_4882| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.3  
SB_58571| Best HMM Match : PLAT (HMM E-Value=1.2e-22)                  27   7.1  
SB_24056| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_53777| Best HMM Match : 7tm_1 (HMM E-Value=0)                       26   9.3  
SB_33942| Best HMM Match : Ribosomal_L37e (HMM E-Value=6.2)            26   9.3  

>SB_56314| Best HMM Match : DUF454 (HMM E-Value=4.3)
          Length = 174

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 5/43 (11%)
 Frame = +3

Query: 15  TRAPGGSLDILIFIYLSSVFILLTAIV-----VLKRVKTGQKI 128
           T+A  G++  ++ + ++ + I+L A++     ++KRVKTG K+
Sbjct: 104 TKAQAGAVVAVVSVSIAILVIILVAVILAACFIVKRVKTGHKV 146


>SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)
          Length = 889

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +3

Query: 24  PGGSLDILIFIYLSSVFILLTAIVVLKRVKTGQKITMG 137
           P  S DI++     ++FILL+A  VLK  K+ QK+ +G
Sbjct: 166 PLSSKDIVVVALGGALFILLSA-AVLKAAKSTQKLFVG 202


>SB_24100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 226 RNRGHQYLRTQYPTVRSF*DDCCQTFSAEHKNSF--KMIRKLPDEEYILN 369
           R+RG  Y    +   R   DDC   F  +    F  ++I KLPD E I+N
Sbjct: 104 RSRGTHYQIINHMLYRE--DDCMFPFRCKGIEHFLLEIINKLPDMEIIIN 151


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +3

Query: 195 GLTRREIYAVQKSWAPVFANSIPNGA---ELLRRLLSNIFR 308
           G+TRR++  +  +W  V   ++P  A   +L  R +  ++R
Sbjct: 561 GVTRRQLLTIATNWYDVIYEAVPRNATPEKLQERTMDKVYR 601


>SB_13944| Best HMM Match : Citrate_synt (HMM E-Value=0)
          Length = 297

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 316 KNSFKMIRKLPDEEYILNP 372
           +N  KM+   PDEEY++NP
Sbjct: 65  ENVMKMMFASPDEEYVVNP 83


>SB_4882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 182 ESNIRTDEKRNIRRSEIVGTSICELNTQRCGAFKTIVVKHFPQNTRIP 325
           E ++R D+  N++  E+     CE   Q  G  KT+V  H  Q   +P
Sbjct: 152 EPSVR-DQLSNLKPGEVGYKIACERLRQEYGQTKTVVAAHDDQILNLP 198


>SB_58571| Best HMM Match : PLAT (HMM E-Value=1.2e-22)
          Length = 651

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
 Frame = -3

Query: 233 RFLNGVYFSSRQSGYWIHFIRITAPPELAYPVAHCY-----LLSSFNSLQNNDRGQ*NKY 69
           R  NG Y+      Y  H   +  PP   YPVA+       +L S +++   D G  N  
Sbjct: 64  RKYNGPYYRPLVQAYTDHLPTVRRPPVDCYPVAYRLNSDYPILHSMDNIYLADDGADNVN 123

Query: 68  GR 63
           GR
Sbjct: 124 GR 125


>SB_24056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 204 SSVRILDSLHPDHRPTRTGLSSCPLLSSVQF 112
           S VR L + HP +RPT   +   P L SV++
Sbjct: 31  SLVRWLLAKHPSYRPTLENILKHPWLGSVKY 61


>SB_53777| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 364

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/60 (21%), Positives = 28/60 (46%)
 Frame = +3

Query: 33  SLDILIFIYLSSVFILLTAIVVLKRVKTGQKITMGNWISQFWWGGDPDEVNPISGLTRRE 212
           +L +++F++L      +T I +  +      +  G  ++ +W G     +NPI  + R E
Sbjct: 239 TLLLVLFVFLFCWSPFVTLIALANQTPNVSHLPYGLGVAAYWCGFFNSSINPIIFVIRNE 298


>SB_33942| Best HMM Match : Ribosomal_L37e (HMM E-Value=6.2)
          Length = 226

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 351 VRQFAD-HLEGILVFCGKCLTTIVLKAPHRWVLSSQILVPTISERRI 214
           +R  AD HL+   +F  + + T      H+W    ++LVP++ ER++
Sbjct: 72  LRTLADVHLKACHLFSNQVVDTA---CQHKWKNLKEVLVPSLPERQM 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,664,927
Number of Sequences: 59808
Number of extensions: 252435
Number of successful extensions: 754
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)