Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N08
         (388 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    24   1.7  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    23   5.1  
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    22   6.8  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 371 GFSMYSSSGSLRIILKEFLC 312
           G S++ +   L+I+LK F+C
Sbjct: 78  GLSLFRNGKVLKIVLKNFMC 97


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 68  RIYFIDRDRCFEES*NWTEDNNGQLD 145
           R +  D+  CF +  +WT D N Q+D
Sbjct: 165 RYFPFDQQTCFMKFGSWTYDGN-QID 189


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = -3

Query: 371 GFSMYSSSGSLRIILKEFLCSAENV*QQSS*KLRTVGY*VRKYWCPRFLNGVYFSSRQSG 192
           G    SS G  R  +   +    +V + S  K++ V   + KY   R +  V F++  +G
Sbjct: 395 GLRYRSSRGQGRPKMLHAIKRGASVIKASIPKIKDVNV-IDKY--SRVIFPVSFAAFNAG 451

Query: 191 YWIHFI 174
           YWI ++
Sbjct: 452 YWIFYV 457


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,944
Number of Sequences: 2352
Number of extensions: 7875
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 29929410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)