Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N08
         (388 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35600.1 68415.m06030 expressed protein                             27   3.3  
At5g03545.1 68418.m00311 expressed protein No ATG start, annotat...    27   4.4  
At3g63410.1 68416.m07139 chloroplast inner envelope membrane pro...    27   4.4  
At1g49630.3 68414.m05566 peptidase M16 family protein / insulina...    27   4.4  
At1g49630.2 68414.m05565 peptidase M16 family protein / insulina...    27   4.4  
At1g49630.1 68414.m05564 peptidase M16 family protein / insulina...    27   4.4  
At1g31880.1 68414.m03918 expressed protein                             27   4.4  
At1g02730.1 68414.m00226 cellulose synthase family protein simil...    27   5.8  
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains...    26   7.6  
At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa...    26   7.6  
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa...    26   7.6  

>At2g35600.1 68415.m06030 expressed protein
          Length = 331

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 99  LKRVKTGQKITMGNWISQFWWGGDPDEVNPISGLTRREIYAVQ 227
           LKR++  +++    W +Q WWG + D +  +  + R    A+Q
Sbjct: 161 LKRIRFSREV-FDKWQAQRWWGENYDRIVELYNVQRFNRQALQ 202


>At5g03545.1 68418.m00311 expressed protein No ATG start, annotated
           according to PMID:11123795
          Length = 70

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 178 SSGSPPHQNWLIQLPIVIFCPVLTLF 101
           S GSP +Q  +I + ++  C V TLF
Sbjct: 43  SFGSPRNQQIMITIALICLCSVFTLF 68


>At3g63410.1 68416.m07139 chloroplast inner envelope membrane
           protein, putative (APG1) similar to SP|P23525 37 kDa
           inner envelope membrane protein, chloroplast precursor
           (E37) {Spinacia oleracea}; contains Pfam profile
           PF01209: methlytransferase, UbiE/COQ5 family
          Length = 338

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = -3

Query: 314 CSAENV*Q-QSS*KLRTVGY*VRKYWCPRFLNGVYFSSRQSGYWIHFIRITA--PPELAY 144
           CS+ +V   + S + R + +    YW  RFL+ VY      G+W   +R  A  P +L++
Sbjct: 50  CSSSSVSSSRPSAQPRFIQHKKEAYWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSH 109

Query: 143 P 141
           P
Sbjct: 110 P 110


>At1g49630.3 68414.m05566 peptidase M16 family protein / insulinase
            family protein contains Pfam domain, PF05193: Peptidase
            M16 inactive domain
          Length = 1080

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 197  TDEKRNIRRSEIVGTSI 247
            TDE+R IRR EI+ TS+
Sbjct: 1018 TDEERQIRREEILSTSL 1034


>At1g49630.2 68414.m05565 peptidase M16 family protein / insulinase
            family protein contains Pfam domain, PF05193: Peptidase
            M16 inactive domain
          Length = 1080

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 197  TDEKRNIRRSEIVGTSI 247
            TDE+R IRR EI+ TS+
Sbjct: 1018 TDEERQIRREEILSTSL 1034


>At1g49630.1 68414.m05564 peptidase M16 family protein / insulinase
            family protein contains Pfam domain, PF05193: Peptidase
            M16 inactive domain
          Length = 1080

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 197  TDEKRNIRRSEIVGTSI 247
            TDE+R IRR EI+ TS+
Sbjct: 1018 TDEERQIRREEILSTSL 1034


>At1g31880.1 68414.m03918 expressed protein
          Length = 344

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 99  LKRVKTGQKITMGNWISQFWWGGDPDEVNPISGLTRREIYAVQ 227
           LKR++  +++    W +Q WWG + D++  +  + R    A+Q
Sbjct: 163 LKRIRFSREM-FDKWQAQRWWGENYDKIVELYNVQRFNRQALQ 204


>At1g02730.1 68414.m00226 cellulose synthase family protein similar to
            cellulose synthase catalytic subunit [gi:13925881] from
            Nicotiana alata, cellulose synthase-4 [gi:9622880] from
            Zea mays
          Length = 1181

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 33   SLDILIFIYLSSVFILLTAIVVLKRVKTGQKITMGNW--ISQFW 158
            SLDI   IYL S+ + L  + +L+   +G  IT+  W    QFW
Sbjct: 988  SLDITFLIYLLSITLTLCMLSLLEIKWSG--ITLHEWWRNEQFW 1029


>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 512

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 219 RIFLFSSVRILDSLHPDHRPTRTGLSSCPLLSSVQF 112
           +++L SSV + D++   +  TR  L+  P  SSV F
Sbjct: 62  QLYLSSSVTVNDAVSSSNNNTRLSLTRVPNSSSVTF 97


>At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger)
           family protein low similarity to nuclear protein np95
           [Mus musculus] GI:4220590; contains Pfam profiles
           PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
           type (RING finger), PF00628: PHD-finger
          Length = 642

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = +2

Query: 2   EGFRHEGAGRFA---RYINIY--LLVFRIYFIDRDRCFEES*NWTEDNNGQLDKPV 154
           EG R++G  R     R + +     V R  F+   RC  E   WT D NG   +P+
Sbjct: 387 EGVRYDGVYRIEKCWRKVGVQGSFKVCRYLFV---RCDNEPAPWTSDENGDRPRPI 439


>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
           family protein low similarity to nuclear protein np95
           [Mus musculus] GI:4220590; contains Pfam profiles
           PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
           type (RING finger), PF00628: PHD-finger
          Length = 645

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = +2

Query: 2   EGFRHEGAGRFA---RYINIY--LLVFRIYFIDRDRCFEES*NWTEDNNGQLDKPV 154
           EG R++G  R     R + +     V R  F+   RC  E   WT D NG   +P+
Sbjct: 390 EGVRYDGVYRIEKCWRKVGVQGSFKVCRYLFV---RCDNEPAPWTSDENGDRPRPI 442


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,936,431
Number of Sequences: 28952
Number of extensions: 179379
Number of successful extensions: 487
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)