Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N07
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    29   0.48 
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    28   0.84 
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    28   0.84 
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    26   4.5  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    26   4.5  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    26   4.5  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.8  

>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = -3

Query: 330 RSTRSARGGTAPRGTAPSVHSSSISAVTPPLLYAQVSLKFVHTLRLESVSYGHSLIPSPD 151
           RST+ +R  +A   T P V+++ ++   PP+    V+    + + + SV +  S +P   
Sbjct: 217 RSTQRSRSSSANPVTTPPVNNTLLTPPAPPVELPPVTTTSPNAI-IRSVQWIRSFVPQAP 275

Query: 150 TFPVLVDLTDT 118
              V+  L  T
Sbjct: 276 IHQVINTLAQT 286



 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 333 SRSTRSARGGTAPRGTAPSVHSSSISAVTPPL 238
           SRS+  +   +APR T  S  SS+    TPP+
Sbjct: 204 SRSSARSTARSAPRSTQRSRSSSANPVTTPPV 235


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 275 TLGAVPRGAVPPRADRVLRDLQG 343
           TLG V RG +P   DR+L  LQG
Sbjct: 475 TLGHVQRGGIPCAYDRMLATLQG 497


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 303 YHHVQIEYYGTCREMPECSENEMSDFPRRMREWVVTLWANWPSGASSTPNNCA 461
           Y+ V  +    C +      N+ +D P R     V+LW + P G + TP   A
Sbjct: 188 YNEVMEKMLNACTKPEMMQFNDGNDIPLRSNP--VSLWKSLPEGETFTPQEAA 238


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 354 CSENEMSDFPRRMREWVVTLWANWPS 431
           CS     + P  MRE ++T   NW S
Sbjct: 58  CSTTGQGEMPLNMRERIITYRFNWAS 83


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 234 YAQVSLKFVHTLRLESVSYGHSL 166
           +A VS +F H LRL+ V+  H +
Sbjct: 288 FASVSTRFSHELRLKPVAVAHGI 310


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 256 CCYSSPSLCPGLVEVCAHLAPRVGF 182
           CC++SPSL   L+ V +  +P + F
Sbjct: 138 CCFNSPSLKTSLIAVSSAESPLIFF 162


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 89  GSSRLISLSGASRDSFRISETRALSAS 9
           G+ +L     +SRD+FR ++T+A S+S
Sbjct: 47  GNKKLKESQFSSRDNFRTTQTQASSSS 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,321
Number of Sequences: 5004
Number of extensions: 46771
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)