Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_N07
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0203 - 20888010-20888162,20888242-20888469,20888969-208890... 33 0.21
12_02_0680 + 21903520-21904093,21904474-21905162 32 0.28
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 30 1.1
06_02_0173 - 12601025-12601071,12601632-12601698,12601857-126019... 30 1.1
01_05_0731 - 24700036-24700173,24700354-24700480,24701245-247013... 30 1.5
02_04_0187 - 20757713-20758632,20759056-20759812 29 2.0
01_01_0942 + 7428384-7429536,7429623-7430335 29 2.6
07_03_0623 - 20033815-20034009,20034308-20034415,20034416-200344... 29 3.4
03_06_0209 - 32377045-32378008,32378086-32378210,32378772-323788... 29 3.4
01_04_0051 + 15430980-15431591 29 3.4
02_04_0335 + 22117902-22119869 28 4.6
01_05_0739 + 24807181-24809121 28 4.6
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 27 8.0
>02_04_0203 -
20888010-20888162,20888242-20888469,20888969-20889073,
20889148-20889225,20889308-20889382,20890037-20890123,
20890216-20890283,20890396-20890483,20890583-20890683,
20890793-20890913,20891008-20891169,20891271-20891441
Length = 478
Score = 32.7 bits (71), Expect = 0.21
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = -3
Query: 435 PRSASSPIM*PPIRACAAGSLTFRSRCTPAFPCKSRSTRSARGGTAPRGTAPSVHSSSIS 256
PR +++ P + +AG L RSR + FP K+ +TRS R G R + +++++
Sbjct: 26 PRVSAAAAASFPCCSTSAGGLRLRSRPS-RFPQKAATTRSGRAGAGARAVVRCMAAAAVA 84
Query: 255 A 253
A
Sbjct: 85 A 85
>12_02_0680 + 21903520-21904093,21904474-21905162
Length = 420
Score = 32.3 bits (70), Expect = 0.28
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 11/61 (18%)
Frame = -2
Query: 352 SGISLQV-P*YSICTWWYCAPRHSSECSLQLYF---------CCYSSPSL-CPGLVEVCA 206
+G+ L V P +++ +W P E + + F C YS+PS+ PGL++VCA
Sbjct: 227 AGVDLPVQPLHTLICYWKARPGREHELTPESGFPTFASYGDTCIYSTPSMEFPGLIKVCA 286
Query: 205 H 203
H
Sbjct: 287 H 287
>10_08_0608 + 19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 451 ITAHGARGRVQPDPALDQRRHLEVVRPRS 537
I A G G V+P PAL+++R +E V+P+S
Sbjct: 1427 IVAQGNSGVVEPSPALEKKR-IEKVKPKS 1454
>06_02_0173 -
12601025-12601071,12601632-12601698,12601857-12601934,
12602235-12602396,12603309-12603440,12604604-12604656,
12605808-12606372
Length = 367
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = -3
Query: 405 PPIRACAAGSLTFRSRCTPAFPCKSRSTRSARGGTAPRGTAPSVHSSSISAVTP 244
PP A AAG+ +S TP P S +A GG A AP + V P
Sbjct: 109 PPKAAAAAGASAAQSPATPTLPPGFSSGLAAYGGAAASQPAPRQAPPASGRVLP 162
>01_05_0731 -
24700036-24700173,24700354-24700480,24701245-24701357,
24702116-24702271,24702439-24702516,24704102-24704203,
24704325-24704393,24704743-24704892
Length = 310
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 355 AARTKCQTSRGACANGWSHYGRTGRAGRAQPPITAHGARGRVQPDPALD-QRRHLEVV 525
A R + GA GW+H GR AG ++ + ++ QP P+ Q R +E+V
Sbjct: 2 AERQVAELGAGAACVGWNHCGRRLAAGAVDGFVSVYDSQS--QPSPSSKWQSREVELV 57
>02_04_0187 - 20757713-20758632,20759056-20759812
Length = 558
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 70 EINLDDPCMKVHCSAGRVCEINEHGEGIWRRNQGVSIRNRL*A--QGVHKLQRDLGIEKG 243
+ N +DP + +C A +N HGE W+ + VS N A + H L+ + G
Sbjct: 151 DANFNDPHTRTNCKAMVRFRVNNHGE--WKVIRLVSDHNHNLARPEERHLLRSARSLIAG 208
Query: 244 RSNSRNRAGVNTRSC 288
RS+S + ++ SC
Sbjct: 209 RSSSVETSKQDSLSC 223
>01_01_0942 + 7428384-7429536,7429623-7430335
Length = 621
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 336 KSRSTRSARGGTAPRGTAPSVHSSSISAVT 247
+SR T S+ GG APRG AP+ + VT
Sbjct: 54 RSRMTSSSGGGRAPRGRAPTEAIARTCGVT 83
>07_03_0623 -
20033815-20034009,20034308-20034415,20034416-20034478,
20035361-20036221,20036881-20037461,20037551-20037623,
20037756-20037947,20038728-20039513
Length = 952
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = -3
Query: 306 GTAPRGTAPSVHSSSISAVTPPL-LYAQVSLKFVHTLRLESVSYGHSLIPSPDTFPVLVD 130
G P G PS +++ + L A++S + H + +E + +PSPD P+LV
Sbjct: 41 GMGPAGATPSKNAAMAELKSRVLGALAKLSDRDTHHIAVEDLDRIIRSLPSPDAVPMLVH 100
Query: 129 --LTDTAGAA 106
+D+ G A
Sbjct: 101 ALASDSPGLA 110
>03_06_0209 -
32377045-32378008,32378086-32378210,32378772-32378816,
32379009-32379295,32379778-32381509,32381631-32381971,
32383753-32383876,32384484-32384722,32385156-32385534
Length = 1411
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 348 PECSENEMSDFPRRMREWVVTLWANWPSGASS 443
P C E D RR+ + T WA+ P ASS
Sbjct: 179 PSCRPWERGDLLRRLATYKPTTWASRPKAASS 210
>01_04_0051 + 15430980-15431591
Length = 203
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = -3
Query: 444 LSSPRSASSPIM*PPIRACAAGSLTFRSRCTPAFPCKSRSTRSARGG 304
L SPR+ P PP A AA R TP++ C+ R ARGG
Sbjct: 123 LGSPRT---PPWLPPHWAAAAQRPWPRGSTTPSWRCRRRMEAGARGG 166
>02_04_0335 + 22117902-22119869
Length = 655
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 130 SHRHGRRCSALSCTDRPD*FHCQEHRVTHSGSRR 29
+H GRRC L CT + +H + H G RR
Sbjct: 307 AHGGGRRCMQLGCTKSAE--GKTDHCIAHGGGRR 338
>01_05_0739 + 24807181-24809121
Length = 646
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 130 SHRHGRRCSALSCTDRPD*FHCQEHRVTHSGSRR 29
+H GRRC L CT + +H + H G RR
Sbjct: 306 AHGGGRRCQFLGCTKSAE--GRTDHCIAHGGGRR 337
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -3
Query: 387 AAGSLTFRSR---CTPAFPCKSRSTRSARGGTAPRGTAPS 277
+A SL RSR P+ R+T A G ++PR TAP+
Sbjct: 253 SASSLVSRSRPSLTAPSSGALQRATPGAAGTSSPRSTAPA 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,131,544
Number of Sequences: 37544
Number of extensions: 394455
Number of successful extensions: 1558
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1556
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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