Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_N07
(569 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger ... 30 0.95
At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger ... 30 0.95
At4g32760.1 68417.m04661 VHS domain-containing protein / GAT dom... 30 0.95
At3g44610.1 68416.m04796 protein kinase family protein similar t... 29 2.2
At3g62630.1 68416.m07035 expressed protein 29 2.9
At1g49890.1 68414.m05593 expressed protein contains Pfam domain,... 28 3.8
At3g18830.1 68416.m02391 mannitol transporter, putative similar ... 28 5.0
At3g02550.1 68416.m00244 LOB domain protein 41 / lateral organ b... 28 5.0
At5g41120.1 68418.m04999 esterase/lipase/thioesterase family pro... 27 6.7
At3g09000.1 68416.m01053 proline-rich family protein 27 6.7
At2g21090.1 68415.m02503 pentatricopeptide (PPR) repeat-containi... 27 8.8
>At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger
(CCCH-type) family protein contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF04677: Protein similar to CwfJ C-terminus 1,
PF04676: Protein similar to CwfJ C-terminus 2
Length = 593
Score = 30.3 bits (65), Expect = 0.95
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -3
Query: 525 HHFQMAALVQRRVRLDSASRSMRSYWGLSSPRSASSPIM 409
H FQ + +QR+ R ++A+RS ++ LSSP S I+
Sbjct: 357 HEFQDESSIQRKPRSENANRSKECWFCLSSPSVESHLIV 395
>At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger
(CCCH-type) family protein contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF04677: Protein similar to CwfJ C-terminus 1,
PF04676: Protein similar to CwfJ C-terminus 2
Length = 404
Score = 30.3 bits (65), Expect = 0.95
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -3
Query: 525 HHFQMAALVQRRVRLDSASRSMRSYWGLSSPRSASSPIM 409
H FQ + +QR+ R ++A+RS ++ LSSP S I+
Sbjct: 168 HEFQDESSIQRKPRSENANRSKECWFCLSSPSVESHLIV 206
>At4g32760.1 68417.m04661 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate HRS
isoform 2 [Homo sapiens] GI:9022389; contains Pfam
profiles PF00790: VHS domain, PF03127: GAT domain
Length = 838
Score = 30.3 bits (65), Expect = 0.95
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 319 ICTWWYCAPRHSSECSLQLYFCCYSSPSL 233
IC P + S CSL+ FCCY S SL
Sbjct: 25 ICDMLNSDPAYVSLCSLRFCFCCYLSLSL 53
>At3g44610.1 68416.m04796 protein kinase family protein similar to
viroid symptom modulation protein (protein
kinase)[Lycopersicon esculentum] gi|7672777|gb|AAF66637;
contains protein kinase domain, Pfam:PF00069
Length = 451
Score = 29.1 bits (62), Expect = 2.2
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = -3
Query: 378 SLTFRSRCTPAFPCKSRSTRSARGGTAPRGTAPSVHSSSISAVTPPLLYAQVSLKFVH-T 202
S++F S T S +RS+ A APS H S S+ PP L + +SL +
Sbjct: 14 SVSFTSAGTTVNRSTSSGSRSSSSAAALT-PAPSAHGSFSSSKLPPSLRSSLSLSDLRFR 72
Query: 201 LRLESVSYGHSLIPSPDTFPVLVDLTDT 118
LRL S G + F L +T+T
Sbjct: 73 LRLGSGDIGSVFLAE---FKSLTAVTET 97
>At3g62630.1 68416.m07035 expressed protein
Length = 380
Score = 28.7 bits (61), Expect = 2.9
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Frame = +3
Query: 141 RGRYLETESRSVHTKPTLGARCAQTSTRPGHREGEE*QQK*SWSEHSELCRGAQYHHVQI 320
RGR L+ SRSVH K + + + EGEE ++ E E R Q +
Sbjct: 152 RGRDLKLRSRSVHRKARSLSPLRNAAYQWNQEEGEE-EEVAGEREVKECIRKLQ----ED 206
Query: 321 EYYGTCREMPEC--SENEMSDFPRRMREWV 404
E + P C S + S + R ++W+
Sbjct: 207 ENVPSAETTPSCSASSSRSSSYGRNSKKWI 236
>At1g49890.1 68414.m05593 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 659
Score = 28.3 bits (60), Expect = 3.8
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = -3
Query: 444 LSSPRSASSPIM*PPIRACAAGSLTFRSRCTPA----FPCKSRSTRSARGGTAPRGTAPS 277
LSSPR +SP+ IR+ + L + +PA P ++R+ S + R PS
Sbjct: 376 LSSPRGMASPVRGSAIRSASPSKLWATTTSSPARALSSPSRARNGVSDQMNAYNRNNTPS 435
Query: 276 VHSSS 262
+ S S
Sbjct: 436 ILSFS 440
>At3g18830.1 68416.m02391 mannitol transporter, putative similar to
mannitol transporter [Apium graveolens var. dulce]
GI:12004316; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 539
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +1
Query: 103 HCSAGRVCEINEHGEGIWR----RNQGVSIRNRL*AQGVHKLQRDLGIE 237
H +V N HGEG+WR R R + A G+H Q+ GI+
Sbjct: 263 HDDVVQVSRRNSHGEGVWRELLIRPTPAVRRVMIAAIGIHFFQQASGID 311
>At3g02550.1 68416.m00244 LOB domain protein 41 / lateral organ
boundaries domain protein 41 (LBD41) identical to LOB
DOMAIN 41 [Arabidopsis thaliana] GI:17227172
Length = 263
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 267 SSISAVTPPLLYAQVSLKFVHTLRLESVSYGHSLIP 160
S + A +PP + +K TLRLE VS + ++P
Sbjct: 204 SEVLAFSPPAVKGSGEIKLDLTLRLEPVSRAYHVVP 239
>At5g41120.1 68418.m04999 esterase/lipase/thioesterase family
protein contains Interpro entry IPR000379
Length = 684
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +3
Query: 231 HREGEE*QQK*SWSEHSELCRGAQYHHVQIEYYGTCREMPEC 356
HR+GEE K W EHSE R A +I +G E C
Sbjct: 513 HRKGEE--YKLFWPEHSEFVRIASKFGAKIIPFGVVGEDDLC 552
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 27.5 bits (58), Expect = 6.7
Identities = 21/66 (31%), Positives = 27/66 (40%)
Frame = +1
Query: 247 SNSRNRAGVNTRSCAAGXXXXXXXXXXXGLAGKCRSAARTKCQTSRGACANGWSHYGRTG 426
S SR R GV + A G +G +A R C SRG G ++ TG
Sbjct: 321 SASRGRPGV---ASAPGSRSGSIERGGGPTSGGSGNARRQSCSPSRGRAPIGNTNGSLTG 377
Query: 427 RAGRAQ 444
GRA+
Sbjct: 378 VRGRAK 383
>At2g21090.1 68415.m02503 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 597
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -3
Query: 192 ESVSYGHSLIPSPDTFPVLVDLTDTAGAAVHFHARIVQIDF 70
ES++ H ++P + + L+DL AG +I ++ F
Sbjct: 437 ESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPF 477
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,747,317
Number of Sequences: 28952
Number of extensions: 275124
Number of successful extensions: 977
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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