Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N06
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    27   1.7  
SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Sc...    26   3.0  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    26   3.0  
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    26   3.0  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    25   5.2  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   5.2  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   6.9  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   6.9  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    25   6.9  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   9.1  

>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 410 PVNPTPSAHPVTTPGPGSVKQLVNFYDSQ 496
           P  PTPS+  + TP PG++     F +SQ
Sbjct: 168 PCIPTPSSALIDTPFPGALDSEFGFDESQ 196


>SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 480 LTSCLTLPGPGVVTGCAEGVGL 415
           +T+C T+PG G++ G  E VGL
Sbjct: 120 ITNCHTVPGEGIIQGLKE-VGL 140


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = -2

Query: 450 GVVTGCAEGVGLTGHRFNLIRRLSRLYSNWSNNRFRRCLWRCYSRNW 310
           GV  GC   V L G     +  L  +   W     +R  W+ Y+ +W
Sbjct: 233 GVCIGCVCSVKLVGLFITAVVGLYTVDELWCLLNDKRVTWKAYAGHW 279


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 419 PTPSAHPVTTPGPGSVKQLVNFYDSQVKGSPIRPY 523
           P P A   T+P P S+ Q   F  SQV G   R Y
Sbjct: 70  PQPCAVLYTSPSPSSISQAGPFAISQVFGPAGRLY 104


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = -2

Query: 522 YGLIGLPLTWLS*KLT-----SCLTLPGPGVVTGCAEGVGLTGHRFNLIRR 385
           + L  LP+T LS  L+     + L++    +VT   EG+ LT H F L +R
Sbjct: 486 FSLDHLPVTILSSDLSYPQYLALLSVADAFIVTSLREGMSLTCHEFILTQR 536


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 139 FLAIYSSECRKTYKPIDKNANIDF 210
           F   + + CR T   +D+NAN +F
Sbjct: 416 FFEYFQASCRHTLNLLDENANYNF 439


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 276 LCRNLSRARITTVLCATAFHINEINICIF 190
           L +NLS   +  ++CA  F   +I  C F
Sbjct: 844 LVKNLSLLELALLICAVRFEARDIPACNF 872


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 194 MQILISLIWKAVAQSTVVMRALLRFRH 274
           M++LISL+W          + LL F+H
Sbjct: 1   MKLLISLLWSIFFSIVYSEKTLLNFKH 27


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 333 TDTDETGCYSNYCK 374
           TDTD  G Y++YCK
Sbjct: 265 TDTDFVGHYNHYCK 278


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 318 CCNTATDTDETGCYSNYCKACST 386
           C   A D  E+ C+  +C+ C T
Sbjct: 714 CDEVAQDAIESRCHHTFCRLCVT 736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,285
Number of Sequences: 5004
Number of extensions: 38209
Number of successful extensions: 98
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)