Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_N06
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138... 31 0.43
05_04_0383 - 20801036-20801309,20801413-20801538,20801706-208017... 29 2.3
07_03_1229 + 25023537-25024094 28 4.0
06_03_1309 + 29223197-29223240,29223358-29223592,29223695-292237... 28 4.0
02_02_0414 + 9972157-9972257,9972925-9973003,9973657-9973755,997... 28 4.0
03_05_0111 - 20919291-20919439,20920128-20920237,20920341-209204... 27 7.0
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081... 27 7.0
11_06_0113 + 20248749-20248944,20249311-20250314 27 9.2
10_08_0081 + 14710478-14710822 27 9.2
10_04_0019 + 7638491-7638982 27 9.2
06_03_1152 + 28044667-28045239,28045330-28045750,28045940-28046298 27 9.2
02_04_0282 - 21569089-21569165,21569836-21569946,21570036-215701... 27 9.2
01_03_0264 - 14419381-14419431,14419807-14419875,14420771-144208... 27 9.2
>07_03_1772 + 29411874-29413218,29413355-29413421,29413749-29413896,
29415293-29415416,29416340-29416590,29416923-29418449,
29418786-29418896,29419576-29419734,29419827-29421734
Length = 1879
Score = 31.5 bits (68), Expect = 0.43
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -2
Query: 441 TGCAEGVGLTGHRFNLIRRLSRLYSNWSNNRFRRCLWRCYSR 316
T CAEG+ LTG RL L S W++++ R+ + R + R
Sbjct: 1767 TACAEGISLTG-----ASRLVMLDSEWNHSKTRQAIARAFRR 1803
>05_04_0383 -
20801036-20801309,20801413-20801538,20801706-20801730,
20801808-20802259,20802330-20802394,20802487-20802711,
20804750-20804878,20805095-20805306,20806861-20806894
Length = 513
Score = 29.1 bits (62), Expect = 2.3
Identities = 9/36 (25%), Positives = 18/36 (50%)
Frame = -2
Query: 339 CLWRCYSRNWCRPRWNWNSGSLCRNLSRARITTVLC 232
C W+ + N C ++W+ +C+++ R R C
Sbjct: 461 CEWKKQAGNVCAASFDWSCSGICKSVDRMRAIHSAC 496
>07_03_1229 + 25023537-25024094
Length = 185
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/35 (31%), Positives = 12/35 (34%)
Frame = +3
Query: 276 RTHYXXXXXXXXXXCCNTATDTDETGCYSNYCKAC 380
R H CNT T + GCY C C
Sbjct: 67 REHALTLSSLAASGTCNTCKVTSQAGCYLYRCAPC 101
>06_03_1309 + 29223197-29223240,29223358-29223592,29223695-29223783,
29223870-29223968,29224065-29224158,29224297-29224514,
29224861-29224967,29225298-29225472,29225596-29225743,
29226548-29226596,29228016-29228162,29229990-29229996,
29230417-29230482,29230773-29231991,29232073-29233149,
29233226-29233355,29233519-29233617,29233817-29233878,
29234429-29234533
Length = 1389
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Frame = -2
Query: 471 CLTLPGPGVVTGCAEGVGLTGHRFNLIR--RLSRLYSNWSNNRFRRCLWRCYSRNWCRPR 298
CL G + GC + +GL G F + L +NN+ W + +
Sbjct: 813 CLDACKKGFLAGCRKVIGLDGCFFKGAKNGELLCAIGKDANNQMYPIAWAVVHKA-NKEE 871
Query: 297 WNWNSGSLCRNL 262
W+W G LC +L
Sbjct: 872 WHWFCGLLCSDL 883
>02_02_0414 +
9972157-9972257,9972925-9973003,9973657-9973755,
9973848-9973913,9974225-9974376,9974503-9974584,
9974696-9974781,9974919-9975098,9975320-9975717,
9976192-9976790,9977141-9977239
Length = 646
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 410 PVNPTPSAHPVTTPGPGSVKQLVNFYDSQVKGSPIRPY 523
PV P HPV S +V +YD Q G P P+
Sbjct: 389 PVQPALPQHPVAYSNGVSSNAIVPYYDDQNGGLPPPPW 426
>03_05_0111 -
20919291-20919439,20920128-20920237,20920341-20920466,
20920545-20920632,20920933-20921053,20921159-20921231,
20921399-20921462,20921543-20921739,20921844-20921899,
20922050-20922146,20923731-20923870
Length = 406
Score = 27.5 bits (58), Expect = 7.0
Identities = 7/30 (23%), Positives = 16/30 (53%)
Frame = -2
Query: 339 CLWRCYSRNWCRPRWNWNSGSLCRNLSRAR 250
C W+ + N C ++W+ +C++ R +
Sbjct: 359 CEWKAQAGNVCAASFDWSCSGICKSADRMK 388
>01_06_0556 + 30207124-30207581,30207692-30207901,30208016-30208100,
30208517-30208676,30208768-30208844,30208985-30209032,
30209504-30209594,30209703-30210004,30210214-30210495,
30210695-30211011,30211113-30211273,30211556-30211665,
30211752-30211902,30212438-30212578,30212688-30212857,
30213485-30213817,30213981-30214271,30214356-30214439,
30214620-30214753,30214946-30215173,30215273-30215444,
30215621-30215875,30215963-30216232
Length = 1509
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 372 YSNWSNNRFRRCLWRCYSRNWCRPRWN 292
YS + N+F+ CLW+ + W P +N
Sbjct: 1227 YSQSTFNQFKLCLWKQWWTYWRSPDYN 1253
>11_06_0113 + 20248749-20248944,20249311-20250314
Length = 399
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 456 GPGVVTGCAEGVGLTGHRFNLIRRLSRLYSN 364
G G+V G E +GL G + R + R Y N
Sbjct: 314 GRGIVDGVEERLGLGGEKLAATREVMRQYGN 344
>10_08_0081 + 14710478-14710822
Length = 114
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 411 GHRFNLIRRLSRLYSNWSNNRFRRCLWRCYSRNWCRPRW 295
G R+ +RR R +S WS+N W ++ PRW
Sbjct: 28 GGRWTEVRRKVRPHSWWSSNAPTTNAWGAFTAPRTVPRW 66
>10_04_0019 + 7638491-7638982
Length = 163
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 483 KLTSCLTLPGPGVVTGCAEGV 421
K T C PGPG G AEGV
Sbjct: 73 KTTGCGLPPGPGGALGAAEGV 93
>06_03_1152 + 28044667-28045239,28045330-28045750,28045940-28046298
Length = 450
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 169 KTYKPIDKNANIDFINMESGGAKYGGNARPTQIP 270
K ++++A+++ IN+ G + G A PT++P
Sbjct: 94 KDVADLEQSADLESINLLHGSEQEGNTASPTRLP 127
>02_04_0282 -
21569089-21569165,21569836-21569946,21570036-21570145,
21570222-21570347,21570433-21570520,21570602-21570722,
21570814-21570886,21571533-21571596,21572250-21572452,
21572557-21572615,21572710-21572809,21574001-21574110
Length = 413
Score = 27.1 bits (57), Expect = 9.2
Identities = 8/36 (22%), Positives = 18/36 (50%)
Frame = -2
Query: 339 CLWRCYSRNWCRPRWNWNSGSLCRNLSRARITTVLC 232
C W+ + N C ++W+ +C+++ R + C
Sbjct: 353 CEWKGQAGNVCVASFDWSCSGICKSVERIKEVHARC 388
>01_03_0264 -
14419381-14419431,14419807-14419875,14420771-14420817,
14421340-14422474
Length = 433
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 248 LPPYFAPPLSILMKSIFAFLSMGLY-VLRHSLE*MAKNKI 132
LPP+ PPL +L+ IF+FLS + V H +A+ ++
Sbjct: 4 LPPF--PPLLLLVAVIFSFLSSSCFAVTSHEAAAIARRQL 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,429,521
Number of Sequences: 37544
Number of extensions: 265197
Number of successful extensions: 704
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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