Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N06
         (526 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_33433| Best HMM Match : Fasciclin (HMM E-Value=1.1e-09)             28   5.4  
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_24958| Best HMM Match : S-methyl_trans (HMM E-Value=1.6e-40)        27   7.2  
SB_15857| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  

>SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +2

Query: 410 PVNPTPSAHPVTTPGPGS 463
           PV  TPS+ P  TPGPGS
Sbjct: 81  PVPATPSSPPRPTPGPGS 98


>SB_33433| Best HMM Match : Fasciclin (HMM E-Value=1.1e-09)
          Length = 454

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 408 HRFNLIRRLSRLYSNWSNNRFRRCLWRCYSRNW 310
           H  N I+R    +  W++ R R  LW   + NW
Sbjct: 260 HTLNYIKRDFDSFHKWNHPRKRESLWHFENGNW 292


>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 410 PVNPTPSAHPVTTPGP 457
           P  PTP+AH  TTP P
Sbjct: 102 PTKPTPTAHTPTTPTP 117



 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 410 PVNPTPSAHPVTTPGP 457
           P  PTP+AH  TTP P
Sbjct: 132 PTTPTPTAHTPTTPTP 147


>SB_24958| Best HMM Match : S-methyl_trans (HMM E-Value=1.6e-40)
          Length = 560

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 267 NLSRARITTVLCATAFHINEINICI 193
           N  RA      CAT++H+  +N+C+
Sbjct: 38  NYKRAMKRKPCCATSYHLYSVNVCL 62


>SB_15857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 419 PTPSAHPVTTPGPGSVKQLVNFYDSQVK 502
           PTPSA P ++ G   VK L +F  +++K
Sbjct: 421 PTPSAPPPSSGGKEKVKALYDFEPARIK 448


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,572,286
Number of Sequences: 59808
Number of extensions: 309913
Number of successful extensions: 847
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)