Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N06
         (526 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77810.2 68414.m09061 galactosyltransferase family protein co...    29   1.4  
At1g77810.1 68414.m09060 galactosyltransferase family protein co...    29   1.4  
At1g35625.1 68414.m04426 protease-associated zinc finger (C3HC4-...    29   1.9  
At1g33430.1 68414.m04138 galactosyltransferase family protein co...    29   1.9  
At1g07540.1 68414.m00807 telomere-binding protein, putative simi...    28   3.3  
At4g26940.1 68417.m03876 galactosyltransferase family protein co...    28   4.4  
At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing ...    28   4.4  
At1g05170.1 68414.m00520 galactosyltransferase family protein          28   4.4  
At2g32430.1 68415.m03962 galactosyltransferase family protein co...    27   5.8  
At4g34370.1 68417.m04883 IBR domain-containing protein similar t...    27   7.7  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    27   7.7  

>At1g77810.2 68414.m09061 galactosyltransferase family protein
           contains Pfam profile PF01762: Galactosyltransferase
          Length = 387

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 8/37 (21%), Positives = 20/37 (54%)
 Frame = -2

Query: 339 CLWRCYSRNWCRPRWNWNSGSLCRNLSRARITTVLCA 229
           C W+  + + C   + W+   +C+++ R +I   +C+
Sbjct: 340 CRWKAEAGDVCVASFEWSCSGICKSVERMKIVHEVCS 376


>At1g77810.1 68414.m09060 galactosyltransferase family protein
           contains Pfam profile PF01762: Galactosyltransferase
          Length = 393

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 8/37 (21%), Positives = 20/37 (54%)
 Frame = -2

Query: 339 CLWRCYSRNWCRPRWNWNSGSLCRNLSRARITTVLCA 229
           C W+  + + C   + W+   +C+++ R +I   +C+
Sbjct: 346 CRWKAEAGDVCVASFEWSCSGICKSVERMKIVHEVCS 382


>At1g35625.1 68414.m04426 protease-associated zinc finger
           (C3HC4-type RING finger) family protein contains Pfam
           domain, PF02225: protease-associated (PA) domain and
           Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
           finger); similar to ReMembR-H2 protein JR702
           [Arabidopsis thaliana] gi|6942149|gb|AAF32326
          Length = 279

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 413 VNPTPSAHPVTTPGPGSVKQLVNFYD 490
           V P     P+ +PGP S+  L +FYD
Sbjct: 245 VPPASETTPLISPGPNSITSLQSFYD 270


>At1g33430.1 68414.m04138 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 395

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -2

Query: 339 CLWRCYSRNWCRPRWNWNSGSLCRNLSRARITTVLCA 229
           C W+  + N C   ++W+   +C+++ R       CA
Sbjct: 346 CQWKAQAGNVCAASFDWSCSGICKSVDRMARVHRACA 382


>At1g07540.1 68414.m00807 telomere-binding protein, putative similar
           to telomere binding protein TBP1 [Nicotiana glutinosa]
           gi|23664357|gb|AAN39330
          Length = 622

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 385 PPNQIKPVPSQSYTFSTPCNHPRT 456
           PP   KP+  +   F+ PCN P T
Sbjct: 433 PPQSTKPLSPEDSDFARPCNVPHT 456


>At4g26940.1 68417.m03876 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 407

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -2

Query: 339 CLWRCYSRNWCRPRWNWNSGSLCRNLSRAR 250
           C W+  + N C   ++W+   +CR+  R +
Sbjct: 360 CEWKAQAGNICVASFDWSCSGICRSADRMK 389


>At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing
           protein similar to SP|P34909 General negative regulator
           of transcription subunit 4 {Saccharomyces cerevisiae};
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 989

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 18/80 (22%), Positives = 28/80 (35%)
 Frame = -2

Query: 519 GLIGLPLTWLS*KLTSCLTLPGPGVVTGCAEGVGLTGHRFNLIRRLSRLYSNWSNNRFRR 340
           G +   + W+     S    PG  VV G    +G      N ++ L +       N +  
Sbjct: 443 GKLSADVAWMGITTNSRDETPGVPVVIGTHCDLGSITQSDNDVQNLEQCRKQSPTNTYAE 502

Query: 339 CLWRCYSRNWCRPRWNWNSG 280
                   +  RP W+W SG
Sbjct: 503 ADISLNGIHGSRPEWDWRSG 522


>At1g05170.1 68414.m00520 galactosyltransferase family protein
          Length = 404

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -2

Query: 339 CLWRCYSRNWCRPRWNWNSGSLCRNLSRAR 250
           C W+  + N C   ++W+   +CR+  R +
Sbjct: 357 CEWKAQAGNICVASFDWSCSGICRSADRIK 386


>At2g32430.1 68415.m03962 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 409

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -2

Query: 339 CLWRCYSRNWCRPRWNWNSGSLCRNLSRAR 250
           C W+  + N C   ++W    +CR+  R +
Sbjct: 362 CEWKAQAGNICVASFDWTCSGICRSADRIK 391


>At4g34370.1 68417.m04883 IBR domain-containing protein similar to
           SP|Q94981 Ariadne-1 protein (Ari-1) {Drosophila
           melanogaster}; contains Pfam profile PF01485: IBR domain
          Length = 597

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 133 ILFLAIYSSECRKTYKPIDKNANIDFINMESG 228
           I ++ +++  C K YKP++KN   + +    G
Sbjct: 273 INWITVHTKLCPKCYKPVEKNGGCNLVRCICG 304


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 413 VNPTPSAHPVTTPGPGSV 466
           V PTPS+ P +TP PG++
Sbjct: 609 VGPTPSSPPPSTPTPGTL 626


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,629,199
Number of Sequences: 28952
Number of extensions: 208331
Number of successful extensions: 561
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)