Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_N05
(484 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz... 28 0.64
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 26 2.6
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 26 2.6
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 26 2.6
SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual 26 3.4
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|... 26 3.4
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 25 4.5
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.9
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 7.9
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi... 25 7.9
>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 338
Score = 28.3 bits (60), Expect = 0.64
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +3
Query: 156 YLGVNCEGIINLSVRNGTVDQGTRIVSINPVGAP 257
Y G + +G+I+L VRN + +G++++ I+ GAP
Sbjct: 294 YEGKSMQGLIHL-VRNNEIAEGSKVLYIHLGGAP 326
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 26.2 bits (55), Expect = 2.6
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 222 TRIVSINPVGAPHGQGGYLQQRLPNNETRTALLGNYLLSEGKPGKVIKVVAKKRIG 389
TR V++NPV PHG G + Q + ++ T + + PG+ + ++A +R G
Sbjct: 198 TRGVAMNPVDHPHGGGNH--QHVGHSTT--------VPRQSAPGQKVGLIAARRTG 243
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 26.2 bits (55), Expect = 2.6
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 222 TRIVSINPVGAPHGQGGYLQQRLPNNETRTALLGNYLLSEGKPGKVIKVVAKKRIG 389
TR V++NPV PHG G + Q + ++ T + + PG+ + ++A +R G
Sbjct: 198 TRGVAMNPVDHPHGGGNH--QHVGHSTT--------VPRQSAPGQKVGLIAARRTG 243
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 26.2 bits (55), Expect = 2.6
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 222 TRIVSINPVGAPHGQGGYLQQRLPNNETRTALLGNYLLSEGKPGKVIKVVAKKRIG 389
TR V++NPV PHG G + Q + ++ T + + PG+ + ++A +R G
Sbjct: 198 TRGVAMNPVDHPHGGGNH--QHVGHSTT--------VPRQSAPGQKVGLIAARRTG 243
>SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual
Length = 336
Score = 25.8 bits (54), Expect = 3.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -3
Query: 266 LAMRSTHWVYGDDTSTLVHGAVAHAQIYYTL 174
L M HW++ D + HG +A + Y L
Sbjct: 157 LLMLLKHWLFERDLENVHHGGIASCALSYML 187
>SPCC61.02 |spt3||histone acetyltransferase complex subunit
Spt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 307
Score = 25.8 bits (54), Expect = 3.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 182 NKSERAQRHRGPGYSYRLHKPSGCSSWPG 268
++ +R Q G G S+ H P CS + G
Sbjct: 234 DRMDRIQNSSGSGGSHAAHHPKNCSLFDG 262
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.4 bits (53), Expect = 4.5
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = -3
Query: 176 LAIDSEVWPWSSSGARQESGIPAQELEHLDHIVNLIALNCGHQVWRTTDLHK 21
L ++ E W S+G Q L+HLD + L++ Q+ L K
Sbjct: 350 LHLEVEAMKWLSAGRTQFGDPDFLPLDHLDVVSKLLSKEFASQIRNNISLSK 401
>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 430
Score = 24.6 bits (51), Expect = 7.9
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 185 KSERAQRHRGPGYSYRLHKPSGCSSWPGRVPAAASAQQRDQDCVTWKLS 331
K E + Y ++ K S C + + A A A++RD DC+ ++L+
Sbjct: 68 KCESEENPNFESYHSKVGKKS-CKRFMRWLKANAFAEERDIDCIWYQLN 115
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 24.6 bits (51), Expect = 7.9
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +2
Query: 152 AIPRSQLRGYNKSERAQRHRGPGYSYRLHKPSGCSSWPGRVPAAASAQQRDQDCVTWKLS 331
A P G S+ + P YR+++ S CSS +V A+ ++ +D + W+
Sbjct: 479 ATPNLSQSGNINSDNSDLSNYPYNDYRVYRMSHCSSNSNKVLASEISESLRRD-LLWERR 537
Query: 332 PK 337
K
Sbjct: 538 QK 539
>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 24.6 bits (51), Expect = 7.9
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Frame = -1
Query: 61 TVGTRYGGPPISTS--FASP 8
+V T + GPPI+TS FASP
Sbjct: 211 SVFTTFAGPPIATSTVFASP 230
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,181
Number of Sequences: 5004
Number of extensions: 52246
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -