Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_N05
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0854 - 32477994-32478161,32478689-32478826,32479225-324794... 33 0.16
01_06_0853 - 32468690-32468857,32469398-32469535,32469930-324701... 33 0.16
11_06_0274 - 21811996-21812256 30 0.85
08_02_0204 - 14253258-14253383,14253685-14253878,14254029-142547... 30 0.85
01_03_0194 + 13645418-13645790,13645879-13647653 29 2.0
06_01_0435 + 3092910-3093392,3093938-3094196,3094636-3094979 29 2.6
05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,300... 29 2.6
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 29 2.6
02_03_0407 - 18675368-18675378,18676047-18676977,18677323-186773... 29 2.6
04_04_1136 - 31142742-31142806,31143245-31143325,31143432-311435... 28 3.4
03_02_0827 + 11582974-11583027,11583210-11584358 28 3.4
08_01_0083 - 604175-605776 28 4.5
04_04_1163 - 31398565-31398654,31398729-31398812,31398893-313990... 28 4.5
11_06_0258 + 21750922-21752272,21752971-21753377 27 6.0
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094... 27 6.0
03_04_0127 - 17508808-17509029,17509195-17509938,17510004-175102... 27 6.0
01_06_1319 - 36267285-36267992 27 6.0
10_08_0303 - 16638379-16640199 27 7.9
01_01_1195 - 9567023-9567789,9567871-9568120 27 7.9
>01_06_0854 -
32477994-32478161,32478689-32478826,32479225-32479440,
32479580-32479656,32481144-32481555,32482248-32482850,
32482954-32483229
Length = 629
Score = 32.7 bits (71), Expect = 0.16
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 57 TVQRDKIYDMIKMLEFLGRDSAFLAGAGAGPWPYLGVNCEGIINLSVRNGTVDQ 218
T+ + ++ +EF G F+A +G GP L VN + +N + N VD+
Sbjct: 542 TISFSNMIGPVEQVEFCGHPVVFIAPSGYGPPEALTVNFQSYVNTMMVNLAVDE 595
>01_06_0853 -
32468690-32468857,32469398-32469535,32469930-32470145,
32470280-32470356,32470483-32470549,32471264-32471866,
32471971-32472258
Length = 518
Score = 32.7 bits (71), Expect = 0.16
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 57 TVQRDKIYDMIKMLEFLGRDSAFLAGAGAGPWPYLGVNCEGIINLSVRNGTVDQ 218
T+ + ++ +EF G F+A +G GP L VN + +N + N VD+
Sbjct: 431 TISFSNMIGPVEQVEFCGHPVVFIAPSGYGPPEALTVNFQSYVNTMMVNLAVDE 484
>11_06_0274 - 21811996-21812256
Length = 86
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 197 AQRHRGPGYSYRLHKPSGCSSWPGRVPAAASAQQRDQDC 313
++R G+ R + SG WP R A+A D+DC
Sbjct: 8 SERDEDEGHGGRGQRSSGVRRWPWRTRPTAAAAVTDEDC 46
>08_02_0204 -
14253258-14253383,14253685-14253878,14254029-14254743,
14254811-14254837,14258779-14258838,14263174-14264844,
14267402-14267518,14267593-14267763,14270248-14270346,
14271684-14271770,14272392-14272475,14272929-14273068,
14274414-14274494,14275492-14275680,14275986-14276022
Length = 1265
Score = 30.3 bits (65), Expect = 0.85
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 6/137 (4%)
Frame = +3
Query: 69 DKIYDMIKMLEFLGRDSAFLAGAGAGPWPYLGVNCEGIINLSVRNGTVDQGTRIVSINPV 248
DK DM+++L LG + G+G G W G +C+ + L + VD + + +
Sbjct: 73 DKEADMLRVLVLLGGRKVWEFGSGNGAWG--GGDCKMVKLLLAKGAYVDPLSDCGTPLHL 130
Query: 249 GAPHGQGG----YLQQRLPNNETRTALLGNYLLSEGKPGKVIKVVAK--KRIGGSNFITA 410
A GQ G L + N+ + ++ K K++ K I G +TA
Sbjct: 131 AATEGQDGTMKILLDHKADYNKMVLGMTPLFVAINHASEKCAKLLVKAGADINGDYVLTA 190
Query: 411 IRETLENHYQDQVLGLG 461
+ +T N + G G
Sbjct: 191 LTDTSFNSVFALLTGRG 207
>01_03_0194 + 13645418-13645790,13645879-13647653
Length = 715
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = +3
Query: 45 YLVPTVQRDKIYDMIKMLEFLGRDSAFLAGAGAGPWPYLGVNCEGIINLSVRNGTVDQGT 224
Y+V V RDK Y++ LE + + AF A P +G+N I+ +V NG +
Sbjct: 71 YVVSYVGRDKYYNLFHGLECVD-NRAFCLLLWAALLPMVGMNTSSILT-AVHNGNEELPD 128
Query: 225 RIVS 236
I+S
Sbjct: 129 IIIS 132
>06_01_0435 + 3092910-3093392,3093938-3094196,3094636-3094979
Length = 361
Score = 28.7 bits (61), Expect = 2.6
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Frame = +3
Query: 213 DQGTRIVSINPVGAP-------HGQGGYLQQRLPNNETRTALLGNYLLSEGKPG 353
D+ R VS+ P GA H +GG Q+RL +A G YL + GKPG
Sbjct: 24 DEDGRGVSLQPTGASLTAVWTVHLEGGSPQRRLL---LHSAAYGRYLAATGKPG 74
>05_01_0384 +
2997465-2999777,2999960-3000035,3003027-3003102,
3003571-3004442,3004592-3004773,3005206-3005295,
3005388-3005675,3005776-3005997,3006053-3006133,
3006634-3006861
Length = 1475
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 245 WVYGDDTSTLVHGAVAHAQIYYTLAIDSEVWPWSSSGARQESGIPAQ 105
W G+ TST VH V + A++ EV PW + G + + AQ
Sbjct: 533 WGNGE-TSTAVHSEVRGVDMRSFWALEHEVGPWLAEGRDRAAAALAQ 578
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -2
Query: 348 VCLHLGDSFQVTQSWSRCWADAAAGTRPGHE 256
VC HLG F T S S C A A G GH+
Sbjct: 22 VCDHLGGCFSPTSSSSSCSA-AGGGVAAGHQ 51
>02_03_0407 -
18675368-18675378,18676047-18676977,18677323-18677376,
18677809-18678039,18678112-18678319,18678405-18678433,
18678638-18678706,18678832-18678893,18679056-18679133,
18679243-18679315,18681135-18681260
Length = 623
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 212 GPGYSYRLHKPSGCSSWPGRVPAA-ASAQQRDQDCVTWKLSPK 337
G +S H+PS ++PG +PAA + V+ K+SPK
Sbjct: 446 GKPFSQADHRPSPTMAYPGAMPAAKPHVRHASSSSVSPKVSPK 488
>04_04_1136 -
31142742-31142806,31143245-31143325,31143432-31143588,
31143695-31143809,31144016-31144083,31144171-31144314,
31144393-31144470,31144555-31144637,31144729-31144768,
31144993-31145067,31145202-31145314,31145839-31145878,
31145977-31146128,31146351-31146405,31146717-31146776,
31147005-31147268,31148379-31148436,31148606-31148637
Length = 559
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 183 INLSVRNGTVDQGTRIVSINPVGAPHGQGGYLQQRLPNNETRTALLGNYLLSEGKPGKVI 362
I+ +R QG + ++ PV P +++RLP ++ R G +SEGK V+
Sbjct: 145 IDRIIRRSLGSQGFTLPTVEPV--PESSVSKVEERLPEDKERWWKKGLKAISEGKLAVVL 202
Query: 363 KVVAK-KRIGGSN 398
+ R+G S+
Sbjct: 203 LAGGQGTRLGSSD 215
>03_02_0827 + 11582974-11583027,11583210-11584358
Length = 400
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = +3
Query: 99 EFLGRDSAFLAGAGAGPWPYLGVNCEGIINLSVRNGTVDQGTRIVSINPVGAPHGQGG 272
EF + A A A P + L + +GT QG +V I PVG G GG
Sbjct: 306 EFRDKPLAAAAAANRTQVPACNMKLRYAPMLELSDGTRIQGATLVVIKPVGEAGGIGG 363
>08_01_0083 - 604175-605776
Length = 533
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 1 VSAVMRNLWRSVVRHTWCPQFSAIRFTI*SRCSSSWAGIPLSW 129
+ AV+ +LWR+V R P +T+ C GIP+ +
Sbjct: 290 LQAVLAHLWRAVCRARRLPPEQVTFYTVMVECRGRVNGIPVGY 332
>04_04_1163 -
31398565-31398654,31398729-31398812,31398893-31399037,
31399118-31399239,31399338-31399376,31399491-31399601,
31399682-31399804,31399946-31400032,31400136-31400207,
31400349-31400621,31400704-31400895,31400988-31401171,
31401339-31401480,31401578-31401821,31401959-31402603,
31403024-31403293
Length = 940
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 351 GKVIKVVAKKRIGGSNFITAIRETLENHYQ-DQVLGLGGMFLLRS 482
G + A IGGS++ I + L H++ D+ L G +F +R+
Sbjct: 233 GVFASLKANSAIGGSDYQDMIDQALNEHFKFDRFLARGDVFCIRN 277
>11_06_0258 + 21750922-21752272,21752971-21753377
Length = 585
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 141 LRRPPRKRNPCPGT-RAS*SYRKSYRAELWAPGMA 40
LRR R+ PCPG R S RK + W+ +A
Sbjct: 254 LRRAARRLRPCPGPHRPSPVARKVFHEREWSESLA 288
>09_04_0070 +
14308446-14308511,14308844-14309005,14309420-14309473,
14310009-14310073,14310391-14310459,14310590-14310767,
14311085-14311231,14311316-14311432,14311507-14311619,
14311703-14311781,14311892-14312020
Length = 392
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 287 TLLQVPALAMRSTHWVYGDDTSTLVHGAVAHAQIYYTLAIDSEVW 153
T PA+A+ S YG TS LV G+ A I L + +W
Sbjct: 129 TASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIW 173
>03_04_0127 -
17508808-17509029,17509195-17509938,17510004-17510242,
17510334-17510436,17510666-17510770,17510838-17510906,
17510998-17511402,17512048-17512156,17512240-17512295
Length = 683
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 90 KMLEFLGRDSA-FLAGAGAGPWPYLGVNCEGIINLS 194
K+ E LG DS L AG WPY+ +I LS
Sbjct: 521 KVAEALGSDSLHLLIDKSAGDWPYIEAKQLALIGLS 556
>01_06_1319 - 36267285-36267992
Length = 235
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 230 RLHKPSGCSSWPGRVPAAA 286
RLH+P G S+ P R P AA
Sbjct: 24 RLHRPDGLSTCPTRAPRAA 42
>10_08_0303 - 16638379-16640199
Length = 606
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 5 QR*CETCGDRWSAIPGAHSSAR*DLRYDQDARVP 106
+R C C RWS +P SS+ + D D P
Sbjct: 43 RRVCPLCNARWSDVPALSSSSAAAVEPDDDDEPP 76
>01_01_1195 - 9567023-9567789,9567871-9568120
Length = 338
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 197 AQRHRGPGYSYRLHKPSGCSSWPGRVPA 280
A+RHR ++R KPS S+ P PA
Sbjct: 147 ARRHREQSGAFRRRKPSSSSASPAPAPA 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,272,932
Number of Sequences: 37544
Number of extensions: 432734
Number of successful extensions: 1240
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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