Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N05
         (484 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20441| Best HMM Match : DUF1394 (HMM E-Value=0)                     64   4e-11
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.22 
SB_24750| Best HMM Match : Rad10 (HMM E-Value=5.1)                     31   0.38 
SB_5200| Best HMM Match : Torsin (HMM E-Value=0)                       31   0.50 
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     29   2.0  
SB_56373| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1)                    28   4.6  
SB_47923| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_28802| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00055)         27   6.1  
SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  27   6.1  
SB_29771| Best HMM Match : F-box (HMM E-Value=5.6e-08)                 27   8.1  
SB_27287| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_20441| Best HMM Match : DUF1394 (HMM E-Value=0)
          Length = 522

 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 27/55 (49%), Positives = 41/55 (74%)
 Frame = +3

Query: 312 ALLGNYLLSEGKPGKVIKVVAKKRIGGSNFITAIRETLENHYQDQVLGLGGMFLL 476
           +LL N L++EGKPGKV+KV A KR G  NF+T +R  L ++Y ++ +G+GG F++
Sbjct: 369 SLLANCLITEGKPGKVLKVEASKRTGDENFVTCMRLALGSYYGNRAVGIGGTFMI 423



 Score = 53.6 bits (123), Expect = 8e-08
 Identities = 24/56 (42%), Positives = 34/56 (60%)
 Frame = +3

Query: 9   GDAKLVEIGGPPYLVPTVQRDKIYDMIKMLEFLGRDSAFLAGAGAGPWPYLGVNCE 176
           G  ++V++GGP YL+P  Q +KIYDM  +         ++ GAGAG    +GVNCE
Sbjct: 299 GKPRIVDVGGPAYLLPLPQLNKIYDMNDVAAKADLPGGYVIGAGAGSHTSVGVNCE 354


>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 33/96 (34%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
 Frame = +2

Query: 26  GDRWSAIPGAHSSAR*DLRYDQDARVPGQGFRFLGGRRSWTMAIPRSQLRG-YNKSERAQ 202
           GDR+SA  G  +    D  Y    R  G   R+L   RS++    R   RG Y  +ER  
Sbjct: 215 GDRYSADRGYGA----DRGYGSSDRYGGSSERYLPPERSYSGG-DRGYDRGSYGGAER-D 268

Query: 203 RHRGPGYSYRLHKPSGCSSWPGRVPAAASAQQRDQD 310
                GYS   ++ S     P R PAAAS    D D
Sbjct: 269 YSSDRGYSSAPYERSSYGPPPQRSPAAASYSSGDND 304


>SB_24750| Best HMM Match : Rad10 (HMM E-Value=5.1)
          Length = 576

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +3

Query: 210 VDQGTRIVSINPVGAPHGQGGYLQQRLPN----NETRTALLGNYLLSEGK 347
           ++  TR  ++ PVG   G  G L  R+ N    +E  T ++GN LL EG+
Sbjct: 515 IELKTRTGTVRPVGMRAGVEGALHIRMANIGHHSEMNTDMIGNVLLKEGQ 564


>SB_5200| Best HMM Match : Torsin (HMM E-Value=0)
          Length = 291

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 101 LEHLDHIVNLIALNCGHQVWRTTDLHKFRI 12
           ++H+DH++NL A N     W TT + K  I
Sbjct: 235 IKHMDHLINLGAFNSNGGFWHTTLIEKHLI 264


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 24/94 (25%), Positives = 40/94 (42%)
 Frame = -3

Query: 308  PGLVVGQTLLQVPALAMRSTHWVYGDDTSTLVHGAVAHAQIYYTLAIDSEVWPWSSSGAR 129
            PGLV+G+T  Q   +          ++T+ L  G     +I   L  +  V     S   
Sbjct: 2939 PGLVIGRTTAQQGPVPPPVRQCRRAEETAFLNKGEKVDLEI--ALEREKIVTSDLESELE 2996

Query: 128  QESGIPAQELEHLDHIVNLIALNCGHQVWRTTDL 27
             E  + A ELE  + ++  ++ + GH+  R  DL
Sbjct: 2997 TERALQANELEKQNKLLEKLSADLGHERSRCEDL 3030


>SB_56373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 266 GRVPAAASAQQRDQDCVTWKL 328
           GR PAA + Q   Q+C++W L
Sbjct: 219 GRTPAAMATQSGHQECLSWLL 239


>SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1)
          Length = 1250

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 128 GGRRSWTMAIPRSQLRGYNKSERAQRHRGPGYSYRLH 238
           G  R    A+P ++ +G+   E A+R RGP  S R H
Sbjct: 305 GATRDQPRAVPAAK-QGFRPCESARRGRGPASSPRAH 340


>SB_47923| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 101 LEHLDHIVNLIALNCGHQVWRTTDLHKFRI 12
           ++H+DH+++L + N     W TT + K  I
Sbjct: 223 IKHMDHLIHLGSFNSNGGFWHTTLIEKHLI 252


>SB_28802| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00055)
          Length = 411

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = -3

Query: 248 HWV---YGDDTSTLVHGAVAHAQIYYTLAIDSEVWPWSSSGARQESGIPAQELEHLD 87
           HW    + +D    +   + H +    + I +E W  SSS   +E GIP   +E  D
Sbjct: 3   HWTARSFNNDKYEQIKEILTHPRTEIDVMIITETW-LSSSHTNEEYGIPGYHIERKD 58


>SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = +3

Query: 105 LGRDSAFLAGAGAGPWPYLGV--NCEGIINLSVRNGTVDQGTRIVS--INPVGAPHGQGG 272
           L   + F       P P+ G+  +C+ I++   R    +  +RI +  +NP  +PHG  G
Sbjct: 23  LNMKNLFFRDGSWSPGPFSGIVFSCKDILS---RKSPFNASSRISTSGLNPENSPHGPHG 79

Query: 273 YL 278
           +L
Sbjct: 80  FL 81


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 320  WKLSPK*RQTRKSYKSGSEETYWRIQLHNGY 412
            W L+P    +R+++ S SE   +R+   NGY
Sbjct: 1012 WNLNPASWASRQTFNSTSERMLFRLYKRNGY 1042


>SB_29771| Best HMM Match : F-box (HMM E-Value=5.6e-08)
          Length = 210

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 269 ALAMRSTHWVYGDDTSTLVHGAV 201
           AL     H V+GDDT  LVH  V
Sbjct: 64  ALTQMDIHRVFGDDTLRLVHSLV 86


>SB_27287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 234 SINPVGAPHGQGGYLQQRLPNNETRTALLGN 326
           S +P+G P    G+L  +L N  TR  +  N
Sbjct: 17  SRSPIGKPEHPNGHLDHQLENRNTRMDMTNN 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,774,257
Number of Sequences: 59808
Number of extensions: 449739
Number of successful extensions: 1026
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)