Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N05
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53149-6|AAZ82856.1|  284|Caenorhabditis elegans Hypothetical pr...    86   1e-17
AL132898-7|CAC14410.1|  413|Caenorhabditis elegans Hypothetical ...    30   0.77 
U00052-4|AAK21419.2|  438|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL021503-6|CAA16424.2|  459|Caenorhabditis elegans Hypothetical ...    28   3.1  
Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.      28   4.1  
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p...    27   9.4  
U23526-2|AAK95867.1|  281|Caenorhabditis elegans Claudin-like in...    27   9.4  
AF252605-1|AAF67351.1|  281|Caenorhabditis elegans Gas3/PMP22-li...    27   9.4  

>U53149-6|AAZ82856.1|  284|Caenorhabditis elegans Hypothetical
           protein C24B5.4 protein.
          Length = 284

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 49/156 (31%), Positives = 84/156 (53%), Gaps = 1/156 (0%)
 Frame = +3

Query: 18  KLVEIGGPPYLVPTVQRDKIYDMIKMLEFLGRDSAFLAGAGAGPWPYLGVNCEGIINLSV 197
           ++ E+GGP  L P    D  +D+ K+ +      A + G GAGPWP +G NCE + ++++
Sbjct: 40  RIAEVGGPGNLYPGFHIDHQFDIPKIGKVCEHPEAAVFGPGAGPWPIVGQNCEMVADVNL 99

Query: 198 RNGTVDQGTRIVSINPVGAPHGQGGYLQQRLPNNETRTALLGNYLLSEG-KPGKVIKVVA 374
           + G V  GTRI  IN     +    Y+Q+ +  +E + +L+ N  LS+  K   V+   A
Sbjct: 100 KTGEV--GTRIAEIN----SNSDKRYVQRII--DEPKFSLMANLALSDADKSSTVVHFKA 151

Query: 375 KKRIGGSNFITAIRETLENHYQDQVLGLGGMFLLRS 482
             R G  N    IR+ L+ H+  +++ L G F++++
Sbjct: 152 SVRKGEKNLTNCIRDGLQEHFGKKIVSLAGQFIIQT 187


>AL132898-7|CAC14410.1|  413|Caenorhabditis elegans Hypothetical
           protein Y59A8B.10 protein.
          Length = 413

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +3

Query: 228 IVSINPVGAPHGQGGYLQQRLPN-NETRTALLGNYLLSEGKPGKVIKVVAKKRIGGSNFI 404
           ++  N VGA  G+GG   + L N N  R  +  N   SE  PG   ++   K  G  N I
Sbjct: 47  LIPSNAVGAIIGKGGEAMRNLKNDNNCRVQMSKN---SETYPGTSERICLVK--GRLNNI 101

Query: 405 TAIRETLENHYQDQVLGLGG 464
            A+ E++++  +++    GG
Sbjct: 102 MAVIESIQDKIREKCADQGG 121


>U00052-4|AAK21419.2|  438|Caenorhabditis elegans Hypothetical
           protein K02F3.7 protein.
          Length = 438

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +2

Query: 179 YNKSERAQRHRGPGYS--YRLHKPSGCSSWPGRVPAAASAQQRDQDCVTW 322
           Y+K+E+ +   GP  S  ++L  PSG  + P + PA+A   +RD D V W
Sbjct: 189 YSKAEKGKVLEGPKTSTTFQLLAPSG-ETLPYK-PASARRFKRDSDMVFW 236


>AL021503-6|CAA16424.2|  459|Caenorhabditis elegans Hypothetical
           protein Y68A4A.10a protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +3

Query: 78  YDMIKMLEFLGRDSAFLAGAGAGPWPYLGVNCEGIINLSVRNGTVDQGTRIVSIN 242
           YD + +LE  G +  F +G G GP     V C   + L   NG +   T I SI+
Sbjct: 300 YDALLILEMTGGE-LFTSGTGPGPIAETSVTCGDDVILQDPNG-IRGNTLIASIS 352


>Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical
           protein D2045.1a protein.
          Length = 959

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
 Frame = +2

Query: 50  GAHSSAR*DLRYDQDARVPGQGFRFLGGRRSWTMAIPRSQLRGYNKSERAQRHR--GPGY 223
           GA ++A+ +   +Q  +   +G+R       W MA  + Q +G++ S R Q+ +   P  
Sbjct: 293 GAPAAAQQNYSQNQQQQQGQKGYRRQNEENDWQMAKGKGQNQGHDHSFRQQQKQMLDPRP 352

Query: 224 SYRLHKPSGCSSWPGRVPAAASAQQRDQDCVTW 322
           +  + KP+   +       AA+   R  D   W
Sbjct: 353 NNNV-KPADDKAQSATTATAAAGGSRVTDLKNW 384


>AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.
          Length = 959

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
 Frame = +2

Query: 50  GAHSSAR*DLRYDQDARVPGQGFRFLGGRRSWTMAIPRSQLRGYNKSERAQRHR--GPGY 223
           GA ++A+ +   +Q  +   +G+R       W MA  + Q +G++ S R Q+ +   P  
Sbjct: 293 GAPAAAQQNYSQNQQQQQGQKGYRRQNEENDWQMAKGKGQNQGHDHSFRQQQKQMLDPRP 352

Query: 224 SYRLHKPSGCSSWPGRVPAAASAQQRDQDCVTW 322
           +  + KP+   +       AA+   R  D   W
Sbjct: 353 NNNV-KPADDKAQSATTATAAAGGSRVTDLKNW 384


>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
           protein T05C12.10 protein.
          Length = 1169

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = +3

Query: 108 GRDSAFLAGAGAGPWPYLGVNCEGIINLSVRNGTVDQGTRIVSINPVGAPHGQGG 272
           G D A  +GAGAG     G    G IN++V       G  +   N     +G GG
Sbjct: 320 GADGAAGSGAGAGA----GAGTNGNINITVHTDGKSGGNAVAVANANVTVNGAGG 370


>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
           protein T05C12.10 protein.
          Length = 1169

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = +3

Query: 108 GRDSAFLAGAGAGPWPYLGVNCEGIINLSVRNGTVDQGTRIVSINPVGAPHGQGG 272
           G D A  +GAGAG     G    G IN++V       G  +   N     +G GG
Sbjct: 320 GADGAAGSGAGAGA----GAGTNGNINITVHTDGKSGGNAVAVANANVTVNGAGG 370


>U23526-2|AAK95867.1|  281|Caenorhabditis elegans Claudin-like in
           caenorhabditisprotein 5 protein.
          Length = 281

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/44 (25%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -3

Query: 446 LVLIMIFQGLPDSRYEVGSSNTFLRYHFYNF--SGFAFT*EIVS 321
           L++ M+   + +S+Y +G  NT+ + + Y++  +G AF   +++
Sbjct: 154 LIVFMVNAEMLESKYLIGIKNTYEKEYGYSYYLAGLAFVISVIT 197


>AF252605-1|AAF67351.1|  281|Caenorhabditis elegans Gas3/PMP22-like
           protein protein.
          Length = 281

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/44 (25%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -3

Query: 446 LVLIMIFQGLPDSRYEVGSSNTFLRYHFYNF--SGFAFT*EIVS 321
           L++ M+   + +S+Y +G  NT+ + + Y++  +G AF   +++
Sbjct: 154 LIVFMVNAEMLESKYLIGIKNTYEKEYGYSYYLAGLAFVISVIT 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,423,257
Number of Sequences: 27780
Number of extensions: 319575
Number of successful extensions: 711
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)