Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N05
         (484 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase, puta...    36   0.011
At3g51940.1 68416.m05697 expressed protein                             30   0.71 
At2g26780.1 68415.m03212 expressed protein contains Pfam profile...    29   1.6  
At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar...    28   3.8  
At4g35830.1 68417.m05090 aconitate hydratase, cytoplasmic / citr...    27   6.6  
At4g30160.1 68417.m04289 villin, putative similar to  villin 2 (...    27   6.6  
At3g54380.2 68416.m06010 SAC3/GANP family protein contains Pfam ...    27   6.6  
At3g54380.1 68416.m06009 SAC3/GANP family protein contains Pfam ...    27   6.6  
At3g11590.1 68416.m01416 expressed protein                             27   6.6  
At2g38250.1 68415.m04697 DNA-binding protein-related contains si...    27   6.6  
At3g50300.1 68416.m05501 transferase family protein similar to a...    27   8.8  
At2g44770.1 68415.m05572 phagocytosis and cell motility protein ...    27   8.8  
At2g34190.1 68415.m04184 xanthine/uracil permease family protein...    27   8.8  
At1g03320.1 68414.m00311 hypothetical protein                          27   8.8  

>At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           GB:CAB10168 from [Lycopersicon esculentum] (J. Exp. Bot.
           47, 2111-2112 (1997)); similar to 9-cis-epoxycarotenoid
           dioxygenase [Phaseolus vulgaris][GI:6715257]
          Length = 577

 Score = 36.3 bits (80), Expect = 0.011
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +3

Query: 102 FLGRDSAFLAGAGAGPWPYLGVNCEGIINLSVRNGTVDQ---GTRIVSINPVGAPHGQG 269
           ++GR S F+  A A PWP     C GI  + ++NGTV +   G       P   P G+G
Sbjct: 463 YVGRKSQFVYIAIADPWP----KCSGIAKVDIQNGTVSEFNYGPSRFGGEPCFVPEGEG 517


>At3g51940.1 68416.m05697 expressed protein 
          Length = 453

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 182 NKSERAQRHRGPGYSYRLHKPSGCSSWPG 268
           N+    +  RG GYS    +P GC+ W G
Sbjct: 306 NQGMEMKEWRGKGYSRDFREPKGCNPWKG 334


>At2g26780.1 68415.m03212 expressed protein contains Pfam profile TBP
            (TATA-binding protein) -interacting protein 120 (TIP120);
            contains TIGRFAM profile TIGR01612:  reticulocyte binding
            protein
          Length = 1866

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 98   EHLDHIVNLIALNCGHQVWRTTD 30
            EHL+HI + + + CG ++WR+ +
Sbjct: 1172 EHLNHIFDDLLVQCGSRLWRSRE 1194


>At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar to
            ASC-1 complex subunit P200 [Homo sapiens] GI:12061185;
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF02889:
            Sec63 domain
          Length = 2146

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 182  YTLAIDSEVWPWSSSGARQESGIPAQELEHLDHIVNL 72
            Y  A+D ++WP      + E  +P+   + LDH+  +
Sbjct: 1142 YCKAVDRQLWPHQHPLRQFERDLPSDRRDDLDHLYEM 1178


>At4g35830.1 68417.m05090 aconitate hydratase, cytoplasmic / citrate
           hydro-lyase / aconitase (ACO) identical to SP|Q42560
           Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate
           hydro-lyase) (Aconitase) {Arabidopsis thaliana};
           contains Pfam profiles PF00330: Aconitase family
           (aconitate hydratase), PF00694: Aconitase C-terminal
           domain
          Length = 898

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = +3

Query: 27  EIGGPPYLVPTVQRDKIYDMIKMLEFLGRDSAFLAGAGAGPWPYLGVNCEGIINLSVRNG 206
           E+G     +PT ++  ++D        GRD+  LAGA  G         +G + L V+  
Sbjct: 741 EVGPKTVHIPTGEKLSVFDAAMKYRNEGRDTIILAGAEYGSGSSRDWAAKGPMLLGVKAV 800

Query: 207 TVDQGTRIVSINPVG 251
                 RI   N VG
Sbjct: 801 ISKSFERIHRSNLVG 815


>At4g30160.1 68417.m04289 villin, putative similar to  villin 2
           (VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
           (VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
           profiles PF00626: Gelsolin repeat, PF02209: Villin
           headpiece domain
          Length = 974

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +2

Query: 221 YSYRLHKPSGCSSWPGRVPAAASAQQRDQDCVTWKLS-PK*RQTRKSYKSGSE-ETYWRI 394
           Y Y LH  S   +W G +  A      DQ+    +L   K  Q  ++ K GSE E +W +
Sbjct: 548 YYYILHNDSSVFTWAGNLSTAT-----DQELAERQLDLIKPNQQSRAQKEGSESEQFWEL 602


>At3g54380.2 68416.m06010 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 383

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = +1

Query: 271 GTCSSVCP----TTRPGLRYLETIS*VKANPEK 357
           GTCSS+CP     TR  LR L     +  NP K
Sbjct: 72  GTCSSMCPERERVTRERLRDLAVFERLYGNPSK 104


>At3g54380.1 68416.m06009 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 406

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = +1

Query: 271 GTCSSVCP----TTRPGLRYLETIS*VKANPEK 357
           GTCSS+CP     TR  LR L     +  NP K
Sbjct: 72  GTCSSMCPERERVTRERLRDLAVFERLYGNPSK 104


>At3g11590.1 68416.m01416 expressed protein
          Length = 622

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
 Frame = +2

Query: 110 QGFRF-----LGGRRSWTMAIPRSQLRGYNKSERAQRHRGPGYSYRLHKPSG-CSSWPGR 271
           +G+RF     +G R   T  +P  +L G + S RA      G  +    PS  C S  G+
Sbjct: 35  EGYRFKRAIVVGKRGGSTTPVPTWRLMGRSPSPRAS-----GALHAAASPSSHCGSKTGK 89

Query: 272 VPAAASAQQRDQDCVTWKLS 331
           V A A    R      W+++
Sbjct: 90  VSAPAPVSARKLAATLWEMN 109


>At2g38250.1 68415.m04697 DNA-binding protein-related contains
           similarity to DNA-binding protein GI:170271 from
           [Nicotiana tabacum]
          Length = 289

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
 Frame = +3

Query: 249 GAPHGQGGYLQQRLPNNETRTALLGNYLLSEGKPGKVI---KVVAKKRIGGSNFITA--- 410
           G   G  G  ++R  +++     +   L+      K++   K +AKKR GGSN   +   
Sbjct: 140 GGGGGTSGAARKREYSSDEEEENVNEELVDVSNDPKILNPKKNIAKKRKGGSNSSNSNNG 199

Query: 411 IRETLENHYQDQV 449
           +RE LE   + QV
Sbjct: 200 VREVLEEFMRHQV 212


>At3g50300.1 68416.m05501 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase,
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 448

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 1   VSAVMRNLWRSVVRHT 48
           + AV+ +LWRS+VRH+
Sbjct: 261 LQAVLAHLWRSIVRHS 276


>At2g44770.1 68415.m05572 phagocytosis and cell motility protein
           ELMO1-related contains weak similarity to ELMO1 [Mus
           musculus] gi|16118551|gb|AAL14464
          Length = 266

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 248 GCSSWPGRVPAAASAQQRDQDC-VTWKLSPK*RQTRKSYKSGSEETY-WRIQLHNGYQGD 421
           G ++W GR  +   AQ+RD D   T+ L+P   +  +S ++  +  Y   I LH     +
Sbjct: 34  GSAAWLGRGLSCVCAQRRDSDANSTFDLTPAQEECLQSLQNRIDVAYDSTIPLHQEALRE 93

Query: 422 LGKSLSGP 445
           L K LS P
Sbjct: 94  LWK-LSFP 100


>At2g34190.1 68415.m04184 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 524

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +1

Query: 97  SSSWAGIP--LSWRAPELDHGHTSESIARV 180
           S+ W  IP  L W AP  D GH    +A V
Sbjct: 260 SAPWIKIPYPLQWGAPSFDAGHAFAMMAAV 289


>At1g03320.1 68414.m00311 hypothetical protein
          Length = 220

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 33  GGPPYLVPTVQRDKIYDMIKMLEFLGRDSAFLAGAGAGPWPY 158
           GGP     ++ R +++D + + ++    +A+   A AGP+PY
Sbjct: 152 GGPIDPYQSMPRPRMFDGVHISQYPPMAAAYPYMAAAGPFPY 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,998,817
Number of Sequences: 28952
Number of extensions: 305421
Number of successful extensions: 826
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)