Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N04
         (572 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2)                   30   1.5  
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)        30   1.5  
SB_3534| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_30174| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   4.7  
SB_33294| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_28842| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2)
          Length = 671

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +3

Query: 306 EQCLE----LLDLDIFNTEDDLLKTFPSAAPKIEYNRLLLHDDQSASLYP 443
           +QC E    L+D    +T   LLK   SAAP ++Y +L+  DD  A L P
Sbjct: 92  QQCQEKDTGLVDGIDASTHLKLLKKIKSAAPGLDYKKLMSGDDPLAILGP 141


>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
          Length = 1128

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = +3

Query: 231 VYITSTMSASHWELSLASASGLLT-DEQCLELLDLDIFNTEDDLLKTFPSAAPKIEYNRL 407
           VY    M+   ++  L  A+ LL  D   +ELL  +I   + DL +   S A + E  + 
Sbjct: 464 VYSVREMALQKYKAELEEANQLLKKDASEIELLKQEIAQLKGDLCRAEESKAEREELRQQ 523

Query: 408 LLHDDQSASLYPPSPAEIKPNRADLS 485
           +    ++++LY     E++  R DLS
Sbjct: 524 IARAREASALYKD---ELETVRKDLS 546


>SB_3534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +3

Query: 306 EQCLE----LLDLDIFNTEDDLLKTFPSAAPKIEYNRLLLHDDQSASLYP 443
           +QC E    L+D    +T   LLK   SAAP ++Y +L+  DD  A L P
Sbjct: 29  QQCQEKDTGLVDGIDASTHLKLLKKIKSAAPGLDYKKLMSGDDPLAILGP 78


>SB_30174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +1

Query: 70  FLVTKRLHTRVCFHAINKNACHHGALTGQFCPATTTLTNYIGNRSLW 210
           F V+  L+T V +H  N    H   L  + CP    +  +I    +W
Sbjct: 141 FPVSNSLYTFVDWH--NNEMVHEAKLDAKICPCDANIVAFIHRNDIW 185


>SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 935

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -3

Query: 399 CIRSSVQRSGTF*ADHLRC*RCPN 328
           C +  VQRSG     HLRC RCPN
Sbjct: 422 CGQGFVQRSGL--NKHLRCRRCPN 443


>SB_33294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 983

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 342 NTEDDLLKTFPSAAPKIEYNRLLLHDDQSASLYPPSPAEIKPNRAD 479
           N++  L  +FP   P++ ++ ++  +D  +S   P P +  P R D
Sbjct: 551 NSDMSLSCSFPEKIPRLSHSPVMYTEDSGSSRRSPFPLQQPPVRLD 596


>SB_28842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +1

Query: 43  RVIIAI*DGFLVTKRLHTR-VCFHAINKNAC--HHGALTGQFCPATTTLTNYIGNRS 204
           +VI+ +    +VT++   R VC H I KN C  ++  +    C  T  L    GN++
Sbjct: 3   QVIVVVKRRKVVTRQSPPRTVCVHLIEKNPCELYYNNIRNSACAFTERLLRLEGNKA 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,707,289
Number of Sequences: 59808
Number of extensions: 391143
Number of successful extensions: 979
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)