Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N04
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11505-10|CAA77588.2|  590|Caenorhabditis elegans Hypothetical p...    28   5.4  
U40802-3|AAM81105.1|  369|Caenorhabditis elegans Dense body prot...    28   5.4  
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot...    28   5.4  
U40802-1|AAM81106.1|  999|Caenorhabditis elegans Dense body prot...    28   5.4  
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele...    28   5.4  
Z93389-8|CAB07673.2|  168|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z11505-10|CAA77588.2|  590|Caenorhabditis elegans Hypothetical
           protein F59B2.11 protein.
          Length = 590

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 240 TSTMSASHWELSLASASGLLTDEQCLELLDLDIFNTEDD 356
           T+T++  +   S+   S L  DE+  E++D    NTEDD
Sbjct: 412 TNTLNEDNNGNSIRKESNLSNDEETDEVVDTHRINTEDD 450


>U40802-3|AAM81105.1|  369|Caenorhabditis elegans Dense body protein
           1, isoform b protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 372 PSAAPKIEYNRLLLHDDQSASLYPPSPAEIKP 467
           P  AP I +N++++ +D  A   PP P E+ P
Sbjct: 128 PPTAPII-HNKMIIREDIPAPPRPPPPVELSP 158


>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
           1, isoform a protein.
          Length = 1010

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 372 PSAAPKIEYNRLLLHDDQSASLYPPSPAEIKP 467
           P  AP I +N++++ +D  A   PP P E+ P
Sbjct: 769 PPTAPII-HNKMIIREDIPAPPRPPPPVELSP 799


>U40802-1|AAM81106.1|  999|Caenorhabditis elegans Dense body protein
           1, isoform c protein.
          Length = 999

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 372 PSAAPKIEYNRLLLHDDQSASLYPPSPAEIKP 467
           P  AP I +N++++ +D  A   PP P E+ P
Sbjct: 769 PPTAPII-HNKMIIREDIPAPPRPPPPVELSP 799


>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
           C.elegans vinculin (deb-1) gene, complete cds. ).
          Length = 1010

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 372 PSAAPKIEYNRLLLHDDQSASLYPPSPAEIKP 467
           P  AP I +N++++ +D  A   PP P E+ P
Sbjct: 769 PPTAPII-HNKMIIREDIPAPPRPPPPVELSP 799


>Z93389-8|CAB07673.2|  168|Caenorhabditis elegans Hypothetical
           protein T13F3.6 protein.
          Length = 168

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
 Frame = +3

Query: 312 CLELLDLDIFNTEDDLLKTFPSAAPKIEYNRLLLHDDQSASL---YPPSPAEIKPNRAD 479
           CL  L  D+   E D    + S  P I+ N   L DDQS  +   Y    A ++P   D
Sbjct: 110 CLNTLFNDVHEPEVDECDQWDSLQPCIKENIANLCDDQSGKIQEQYVKQTANLRPEFCD 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,598,273
Number of Sequences: 27780
Number of extensions: 284481
Number of successful extensions: 698
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)