Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N04
         (572 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48890.1 68416.m05341 cytochrome b5 domain-containing protein...    29   2.2  
At5g51470.1 68418.m06383 auxin-responsive GH3 family protein sim...    28   3.8  
At3g62140.1 68416.m06982 expressed protein  ; expression support...    28   3.8  
At1g63360.1 68414.m07162 disease resistance protein (CC-NBS-LRR ...    28   3.8  
At1g29110.1 68414.m03563 cysteine proteinase, putative contains ...    27   6.7  

>At3g48890.1 68416.m05341 cytochrome b5 domain-containing protein
           similar to SP|O00264 Membrane associated progesterone
           receptor component (mPR) {Homo sapiens}; contains Pfam
           profile PF00173: Heme/Steroid binding domain
          Length = 233

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +2

Query: 92  TPACAFTQLIKMLAIMAPLPDSFVLPQLHSPITSVTDPSGLKL-APVSLHHINNE 253
           +PA  FT L    A+   +   FV P++H P +    P    L  PV L  I  E
Sbjct: 20  SPAAFFTVLALAFAVYQVVSGFFVSPEVHRPRSLEVQPQSEPLPPPVQLGEITEE 74


>At5g51470.1 68418.m06383 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 581

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 270 LSLASASGLLTDEQCLELLDLDIFNTEDDLLKTFPSAAPKIEYNRLLLHDDQSASLY 440
           +SL S      DE+ LE L  ++   +D++L+   +     EY R  LH   S  L+
Sbjct: 1   MSLCSDLTEKLDEEILEDLTSNVKQIQDNVLEEILTLNANTEYLRRFLHGSSSKELF 57


>At3g62140.1 68416.m06982 expressed protein  ; expression supported
           by MPSS
          Length = 241

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 342 NTEDDLLKTFPSAAPKIEYNRLLLHDDQSASLYPPSPA--EIKP 467
           N ED+ L+ F +A   +     +LH+ + A+L PP+P   E KP
Sbjct: 120 NEEDEQLRNFQAA---VAARSAILHEPKEAALPPPAPVTKEQKP 160


>At1g63360.1 68414.m07162 disease resistance protein (CC-NBS-LRR
            class), putative domain signature CC-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 884

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
 Frame = +3

Query: 33   LFFSCYHCDLRWVSSNQTFAHPRVLSRN**KCLPSWRPYRTVLSCHNYTHQLHR*QIPLV 212
            LF S    DL  V   +T  H  +L+         +     +LS H+   +++   +  +
Sbjct: 645  LFRSRLPWDLNTVKELETLEHLEILTTTIDPRAKQFLSSHRLLS-HSRLLEIYGSSVSSL 703

Query: 213  *NSHL*VYITSTMSASHWELSLASASGLLTDEQC--LELLDLDIFNTEDDLLKTFPSAAP 386
             N HL     ST     +++   S S +     C  L L+D++IFN E     TF   AP
Sbjct: 704  -NRHLESLSVSTDKLREFQIKSCSISEIKMGGICNFLSLVDVNIFNCEGLRELTFLIFAP 762

Query: 387  KI 392
            KI
Sbjct: 763  KI 764


>At1g29110.1 68414.m03563 cysteine proteinase, putative contains
           similarity to cysteine protease SPCP1 GI:13491750 from
           [Ipomoea batatas]
          Length = 334

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 216 FRPEGSVTDVIGECSCGRTKLSGKGAMMAS 127
           +R EG+VT V  + +C  TK+SGK  +  S
Sbjct: 136 WRDEGAVTPVKYQGACRLTKISGKNLLTLS 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,755,090
Number of Sequences: 28952
Number of extensions: 259340
Number of successful extensions: 698
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)