Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N03
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   0.55 
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    25   3.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   3.9  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    25   5.1  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    25   5.1  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    24   6.8  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    24   9.0  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    24   9.0  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 0.55
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 79  YICQRITQVS*GQL--SEDRNLAWSTRAKAGLIQMFSTHRDCESTAY 213
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 374 NPTLAEFCFQMIGRADIEGSKSNV-AMNAWLPQASYPCGN 258
           NP  A F FQ + ++  EGS +N    N  +PQA+ P  N
Sbjct: 114 NPDFANF-FQAMLQSAKEGSDTNFQGENEQIPQATAPLKN 152


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 260  NFSGTSC*KLFILKDR*AVLSQSL 189
            N  G S  KLFI+KD   V+SQ L
Sbjct: 3491 NIGGRSPQKLFIVKDSGQVMSQDL 3514


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 129 QKPRVEHKGKSWL 167
           +KP+V HK K+W+
Sbjct: 58  EKPKVSHKAKNWV 70


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = -1

Query: 219 GSIGRAFAVPMRTEHLD-QASFCPCAPREVSVLAELALGHLR-YSLTDV-PPQSNSPPGS 49
           GS G  F+   RT  LD +        + V++L   ++ + + Y+L  + PP +  PP S
Sbjct: 129 GSAGPLFSSTARTSRLDSRLPDGGIIAKPVALLPTPSVANSQEYTLDKLSPPSTAKPPAS 188

Query: 48  VLE 40
           V+E
Sbjct: 189 VIE 191


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 136  LAWSTRAKAGLIQMFSTHRDCES 204
            L  STR K  L ++FS   DC S
Sbjct: 1425 LVTSTRQKESLSKIFSDSEDCNS 1447


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 289 GCHKPVIPVVTFLAPLAKNSLY*RID 212
           GC    IP+VT    L ++ +Y  +D
Sbjct: 144 GCSSQAIPIVTAYETLGEDGIYTSLD 169


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 180 EHLDQASFCPCAPREVSVLAELALGHLRYSLTD 82
           E  D+   CPC+P+  ++  +  LG + Y  +D
Sbjct: 570 EMYDEKLDCPCSPKSWNISDD--LGQIEYIFSD 600


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,563,872
Number of Sequences: 5004
Number of extensions: 29014
Number of successful extensions: 69
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)